Browse Element(s) Details

Os.9229.2.S1_x_at

Description

gb:AK063450.1
DB_XREF= gi:32973468
TID=Os.9229.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9229 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-F12, full insert sequence.
FL= gb:AK063450.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g47350	10/11	RNA polymerase I specific transcription initiation factor RRN3 family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g47300	Os.27428.1.S1_at	11/11	6	+	28669241..28673824	RNA-binding protein, putative, expressed
LOC_Os06g47300	OsAffx.13466.1.S1_at	1/11	6	+	28669241..28673824	RNA-binding protein, putative, expressed
LOC_Os06g47310	OsAffx.28147.1.S1_at	2/11	6	+	28678748..28679747	uncharacterized plant-specific domain TIGR01627 family protein
LOC_Os06g47320	Os.11699.1.S1_at	10/11	6	+	28681054..28686080	T-complex protein 1, eta subunit, putative, expressed
LOC_Os06g47330	Os.14107.1.S1_at	11/11	6	+	28687839..28693004	EH-domain containing protein 2, putative, expressed
LOC_Os06g47340	Os.425.1.S1_s_at	11/11	6	+	28693933..28697428	glycosyltransferase, putative, expressed
LOC_Os06g47350	Os.9229.3.S1_x_at	11/11	6	+	28698611..28705482	RNA polymerase I specific transcription initiation factor RRN3 family protein, expressed
LOC_Os06g47350	Os.9229.2.S1_x_at	10/11	6	+	28698611..28705482	RNA polymerase I specific transcription initiation factor RRN3 family protein, expressed
LOC_Os06g47360	OsAffx.15971.1.S1_x_at	9/11	6	+	28706293..28707351	Expansin-related protein 2 precursor, putative, expressed
LOC_Os06g47360	OsAffx.15971.1.S1_at	9/11	6	+	28706293..28707351	Expansin-related protein 2 precursor, putative, expressed
LOC_Os06g47370	NA	NA	6	+	28709015..28711976	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g47380	Os.10703.2.S1_x_at	1/11	6	+	28712293..28718382	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g47390	OsAffx.5135.1.S1_at	11/11	6	+	28719941..28720587	hypothetical protein
LOC_Os06g47390	OsAffx.15971.1.S1_at	1/11	6	+	28719941..28720587	hypothetical protein
LOC_Os06g47390	OsAffx.15971.1.S1_x_at	1/11	6	+	28719941..28720587	hypothetical protein
LOC_Os06g47400	OsAffx.15972.1.S1_at	11/11	6	+	28722597..28723358	F-box domain containing protein
LOC_Os06g47410	OsAffx.5136.1.S1_at	11/11	6	+	28724243..28725531	hypothetical protein
LOC_Os06g47410	OsAffx.5118.1.S1_x_at	3/11	6	+	28724243..28725531	hypothetical protein
LOC_Os06g47420	OsAffx.5118.1.S1_x_at	1/11	6	+	28725889..28727266	transposon protein, putative, unclassified

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Gene Ontology Classification

GO id	Type	Name
GO:0003701	molecular_function	RNA polymerase I transcription factor activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.9229.2.S1_x_at--1057--791	1	Chr06:28701974..28701998 (25 bp)	GGTTGTTTTTTGTGAGCACCTCAAG	LOC_Os06g47350
Os.9229.2.S1_x_at--805--983	1	Chr06:28702004..28702028 (25 bp)	TAAAGAACATGGTCGCTTACCCCAG	LOC_Os06g47350
Os.9229.2.S1_x_at--996--485	1	NONE	GCTTACCCCAGGAGTTTGACATTCT	NONE
Os.9229.2.S1_x_at--223--141	1	Chr06:28702909..28702933 (25 bp)	AGACTATCTTTCGAGCATCTGTGCT	LOC_Os06g47350
Os.9229.2.S1_x_at--1093--73	1	Chr06:28703108..28703132 (25 bp)	ATGTTTTATGCCTGCTCACTGGATC	LOC_Os06g47350
Os.9229.2.S1_x_at--340--637	1	Chr06:28703129..28703153 (25 bp)	GATCCTGAAATCTGTGGCCTTGAAT	LOC_Os06g47350
Os.9229.2.S1_x_at--166--953	2	Chr06:28703158..28703182 (25 bp)	TCTCTTCCTCTCTGATATCTTTATT	LOC_Os06g47350
Os.9229.2.S1_x_at--497--819	1	Chr06:28703634..28703658 (25 bp)	GGAAGCTATTTGTCTCGGGCAAGGT	LOC_Os06g47350
Os.9229.2.S1_x_at--352--761	1	Chr06:28703650..28703674 (25 bp)	GGGCAAGGTTCATTTCTGCTGATAC	LOC_Os06g47350
Os.9229.2.S1_x_at--310--29	1	Chr06:28705263..28705287 (25 bp)	ATAGACTAGCAGGTAGCCCTCTGGT	LOC_Os06g47350
Os.9229.2.S1_x_at--2--141	1	Chr06:28705295..28705319 (25 bp)	AGACAGGCCTGTTTTGATGTAGAAC	LOC_Os06g47350

Target Sequence

GGTTGTTTTTTGTGAGCACCTCAAGTCATGTAAAGAACATGGTCGCTTACCCCAGGAGTTTGACATTCTGAAGACTATCT
TTCGAGCATCTGTGCTAAGGGTGCACAAATCCAAATTTGCACAGTTTATCATGTTTTATGCCTGCTCACTGGATCCTGAA
ATCTGTGGCCTTGAATTCGCTCTCTTCCTCTCTGATATCTTTATTAAAAAGGAAGAGGATTCAATTTCTAGAATGTCTGC
AGTTTCATATGTTGGAAGCTATTTGTCTCGGGCAAGGTTCATTTCTGCTGATACGGTGGTTGGTATACTCAAAAGGTTAG
TGGACTGGTGTGTTGACTATTGTGACTATAGACTAGCAGGTAGCCCTCTGGTATGTAAAAGACAGGCCTGTTTTGATGTA
GAAC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis