Browse Element(s) Details


OsAffx.28147.1.S1_at

Description tigr:9634.m04609
TID=OsAffx.28147.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g473102/11uncharacterized plant-specific domain TIGR01627 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47280OsAffx.28146.1.S1_at11/116+28653840..28655981hypothetical protein
LOC_Os06g47290Os.24780.1.A1_a_at11/116+28657267..28661112Plant protein family protein, expressed
LOC_Os06g47300Os.27428.1.S1_at11/116+28669241..28673824RNA-binding protein, putative, expressed
LOC_Os06g47300OsAffx.13466.1.S1_at1/116+28669241..28673824RNA-binding protein, putative, expressed
LOC_Os06g47310OsAffx.28147.1.S1_at2/116+28678748..28679747uncharacterized plant-specific domain TIGR01627 family protein
LOC_Os06g47320Os.11699.1.S1_at10/116+28681054..28686080T-complex protein 1, eta subunit, putative, expressed
LOC_Os06g47330Os.14107.1.S1_at11/116+28687839..28693004EH-domain containing protein 2, putative, expressed
LOC_Os06g47340Os.425.1.S1_s_at11/116+28693933..28697428glycosyltransferase, putative, expressed
LOC_Os06g47350Os.9229.3.S1_x_at11/116+28698611..28705482RNA polymerase I specific transcription initiation factor RRN3 family protein, expressed
LOC_Os06g47350Os.9229.2.S1_x_at10/116+28698611..28705482RNA polymerase I specific transcription initiation factor RRN3 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28147.1.S1_at--3--6711Chr06:28679615..28679639 (25 bp)
GTTCCTCTGCGAGGAGAATCGCGTG
LOC_Os06g47310
OsAffx.28147.1.S1_at--145--5931Chr06:28679628..28679652 (25 bp)
GAGAATCGCGTGGAGGAAACCAGCA
LOC_Os06g47310
OsAffx.28147.1.S1_at--317--1511Chr06:28679649..28680151 (25 bp)
AGCACCAGCTGCTGCCATATTTGGT
NONE
OsAffx.28147.1.S1_at--1000--9091Chr06:28680136..28680160 (25 bp)
TGCTGCCATATTTGGTGAGGGCGCT
NONE
OsAffx.28147.1.S1_at--886--9231Chr06:28680181..28680205 (25 bp)
TCCATGGTGGCCATGACTGGCTGTG
NONE
OsAffx.28147.1.S1_at--667--7991Chr06:28680221..28680245 (25 bp)
GGATGACTGGCCAGCCACAGTGCCA
NONE
OsAffx.28147.1.S1_at--554--3391Chr06:28680280..28680304 (25 bp)
CAGCGAGACAGCATGGTGACACACT
NONE
OsAffx.28147.1.S1_at--869--5631Chr06:28680286..28680310 (25 bp)
GACAGCATGGTGACACACTGCCACA
NONE
OsAffx.28147.1.S1_at--612--7911Chr06:28680364..28680388 (25 bp)
GGTTGCAGCCTGACGCGACGCGCAC
NONE
OsAffx.28147.1.S1_at--346--5731Chr06:28680443..28680467 (25 bp)
GACTGCGTGGATTTGGCTGCAACGA
NONE
OsAffx.28147.1.S1_at--1159--10211Chr06:28680454..28680478 (25 bp)
TTTGGCTGCAACGAGGCAACGACGA
NONE
Target Sequence 
GTTCCTCTGCGAGGAGAATCGCGTGGAGGAAACCAGCACCAGCTGCTGCCATATTTGGTGAGGGCGCTGGGGCCTCGCTG
CCGTGCCGTCCATGGTGGCCATGACTGGCTGTGGCTGGCTGGATGGATGGATGACTGGCCAGCCACAGTGCCACTCCTCC
CAACTGACGCCCTGTGTTGGGTGGGAGCAGCGAGACAGCATGGTGACACACTGCCACAGTGCCACGCCCCGTCGGCTGTT
GCCTCGTCGCCTCTGCTGCTGCTGCAGCAGCGGTTGCAGCCTGACGCGACGCGCACGTTGCCGGGCGCCGCTGCGGCTGC
GGCGAGGGTCGCAACTGGCTCGGTGGATGGGACTGCGTGGATTTGGCTGCAACGAGGCAACGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28147.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis