Browse Element(s) Details


Os.27428.1.S1_at

Description gb:AK061485.1
DB_XREF= gi:32971503
TID=Os.27428.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27428 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-309-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-309-A02, full insert sequence.
FL= gb:AK061485.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4730011/11RNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47250OsAffx.15968.1.S1_at11/116+28643142..28647822expressed protein
LOC_Os06g47260OsAffx.15969.1.S1_at11/116+28650190..28651600Ras-related protein RHN1, putative, expressed
LOC_Os06g47270Os.50815.1.S1_at11/116+28651795..28653125Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g47280OsAffx.28146.1.S1_at11/116+28653840..28655981hypothetical protein
LOC_Os06g47290Os.24780.1.A1_a_at11/116+28657267..28661112Plant protein family protein, expressed
LOC_Os06g47300Os.27428.1.S1_at11/116+28669241..28673824RNA-binding protein, putative, expressed
LOC_Os06g47300OsAffx.13466.1.S1_at1/116+28669241..28673824RNA-binding protein, putative, expressed
LOC_Os06g47310OsAffx.28147.1.S1_at2/116+28678748..28679747uncharacterized plant-specific domain TIGR01627 family protein
LOC_Os06g47320Os.11699.1.S1_at10/116+28681054..28686080T-complex protein 1, eta subunit, putative, expressed
LOC_Os06g47330Os.14107.1.S1_at11/116+28687839..28693004EH-domain containing protein 2, putative, expressed
LOC_Os06g47340Os.425.1.S1_s_at11/116+28693933..28697428glycosyltransferase, putative, expressed
LOC_Os06g47350Os.9229.3.S1_x_at11/116+28698611..28705482RNA polymerase I specific transcription initiation factor RRN3 family protein, expressed
LOC_Os06g47350Os.9229.2.S1_x_at10/116+28698611..28705482RNA polymerase I specific transcription initiation factor RRN3 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27428.1.S1_at--966--1291Chr06:28672300..28672402 (25 bp)
AGATGTTTTCTCAAGTTGCGCGGGA
LOC_Os06g47300
Os.27428.1.S1_at--219--1691Chr06:28673188..28673212 (25 bp)
AGCCATAAACCGTCTCCAAGGAGTT
LOC_Os06g47300
Os.27428.1.S1_at--897--3291Chr06:28673418..28673442 (25 bp)
CAAATCTCGGATGGGCCTGCGTAAG
LOC_Os06g47300
Os.27428.1.S1_at--944--5771Chr06:28673469..28673493 (25 bp)
GACGAGGCTGCAGTTGTTTCTCATA
LOC_Os06g47300
Os.27428.1.S1_at--656--6831Chr06:28673484..28673508 (25 bp)
GTTTCTCATACAGCGCAACTGGCAG
LOC_Os06g47300
Os.27428.1.S1_at--807--6271Chr06:28673517..28673541 (25 bp)
GATGTTTCCTGACTGGTCTTCCAAG
LOC_Os06g47300
Os.27428.1.S1_at--840--3631Chr06:28673534..28673558 (25 bp)
CTTCCAAGTGCTGTTTAGTCTGATG
LOC_Os06g47300
Os.27428.1.S1_at--1155--6771Chr06:28673602..28673626 (25 bp)
GTTATGGTGCATCGGTGGTCTTTCA
LOC_Os06g47300
Os.27428.1.S1_at--18--6991Chr06:28673667..28673691 (25 bp)
GTACCTGTGTAGTTGTCTTACCTTC
LOC_Os06g47300
Os.27428.1.S1_at--9--7271Chr06:28673680..28673704 (25 bp)
TGTCTTACCTTCTGGTTCTTTTCAA
LOC_Os06g47300
Os.27428.1.S1_at--599--5331Chr06:28673740..28673764 (25 bp)
GAAGTCAGCATACCCATGTAATCAT
LOC_Os06g47300
Target Sequence 
AGATGTTTTCTCAAGTTGCGCGGGATTCATAAAGGTGAAGATGCAAAACAAGTTTGGAGCTCCAGTTGCATTTGTGGATT
TCAAGGATATGGACAGTTCAACTGAAGCCATAAACCGTCTCCAAGGAGTTATTTTGTATTCATCAACTGGCGAGGGGATG
CGTTTAGAATATGCCAAATCTCGGATGGGCCTGCGTAAGCAGGATAAGCGCCAATAGATATGATAGACGAGGCTGCAGTT
GTTTCTCATACAGCGCAACTGGCAGTGGAGCATGATGTTTCCTGACTGGTCTTCCAAGTGCTGTTTAGTCTGATGACACA
ATGTTTTGTTCAGTGAAATGTTTTGCTCATGATGTTAGGTTATGGTGCATCGGTGGTCTTTCAGTTCCATAACATTTTGT
AATTGGGTTTGGTAACTTAAGCTGTACCTGTGTAGTTGTCTTACCTTCTGGTTCTTTTCAACCCTATACTTTCTAGGCTG
TTCATTAGCTACTGTTGAAGTCAGCATACCCATGTAATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27428.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis