Browse Element(s) Details


OsAffx.15969.1.S1_at

Description tigr:9634.m04604
TID=OsAffx.15969.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to RAB5A protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4726011/11Ras-related protein RHN1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47210Os.54309.1.S1_at11/116+28619995..28627008Peptidase family M3 containing protein, expressed
LOC_Os06g47220OsAffx.5134.1.S1_at10/116+28628473..28630394expressed protein
LOC_Os06g47220OsAffx.30891.1.S1_x_at2/116+28628473..28630394expressed protein
LOC_Os06g47230Os.12237.1.S1_a_at11/116+28638397..28640586expressed protein
LOC_Os06g47230Os.12237.2.S1_a_at11/116+28638397..28640586expressed protein
LOC_Os06g47240Os.57160.1.S1_at3/116+28641657..28641960hypothetical protein
LOC_Os06g47250OsAffx.15968.1.S1_at11/116+28643142..28647822expressed protein
LOC_Os06g47260OsAffx.15969.1.S1_at11/116+28650190..28651600Ras-related protein RHN1, putative, expressed
LOC_Os06g47270Os.50815.1.S1_at11/116+28651795..28653125Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g47280OsAffx.28146.1.S1_at11/116+28653840..28655981hypothetical protein
LOC_Os06g47290Os.24780.1.A1_a_at11/116+28657267..28661112Plant protein family protein, expressed
LOC_Os06g47300Os.27428.1.S1_at11/116+28669241..28673824RNA-binding protein, putative, expressed
LOC_Os06g47300OsAffx.13466.1.S1_at1/116+28669241..28673824RNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0045022biological_processearly endosome to late endosome transport
GO:0045045biological_processsecretory pathway
GO:0005624cellular_componentmembrane fraction
GO:0005769cellular_componentearly endosome
GO:0010009cellular_componentexternal side of endosome membrane
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15969.1.S1_at--6--6731Chr06:28650483..28650507 (25 bp)
GTTCTTCTCGCAGGTGCTGATCATG
LOC_Os06g47260
OsAffx.15969.1.S1_at--284--9511Chr06:28650488..28650512 (25 bp)
TCTCGCAGGTGCTGATCATGGACGA
LOC_Os06g47260
OsAffx.15969.1.S1_at--248--10571Chr06:28651248..28651272 (25 bp)
TTCTACGAACTAGGCAAGCACTACC
LOC_Os06g47260
OsAffx.15969.1.S1_at--654--5171Chr06:28651261..28651285 (25 bp)
GCAAGCACTACCGAAACAACTCTGT
LOC_Os06g47260
OsAffx.15969.1.S1_at--730--5531Chr06:28651273..28651297 (25 bp)
GAAACAACTCTGTCGGATTCAACTC
LOC_Os06g47260
OsAffx.15969.1.S1_at--358--2551Chr06:28651278..28651302 (25 bp)
AACTCTGTCGGATTCAACTCTCTGA
LOC_Os06g47260
OsAffx.15969.1.S1_at--681--7931Chr06:28651287..28651311 (25 bp)
GGATTCAACTCTCTGATGCATCGTC
LOC_Os06g47260
OsAffx.15969.1.S1_at--464--9471Chr06:28651298..28651322 (25 bp)
TCTGATGCATCGTCGCCTGATAATA
LOC_Os06g47260
OsAffx.15969.1.S1_at--99--4971Chr06:28651304..28651328 (25 bp)
GCATCGTCGCCTGATAATAACATCT
LOC_Os06g47260
OsAffx.15969.1.S1_at--581--9751Chr06:28651318..28651342 (25 bp)
TAATAACATCTACGTGTTGTTGCCA
LOC_Os06g47260
OsAffx.15969.1.S1_at--392--1911Chr06:28651329..28651353 (25 bp)
ACGTGTTGTTGCCAGCTGATAGGCT
LOC_Os06g47260
Target Sequence 
GTTCTTCTCGCAGGTGCTGATCATGGACGAGGCCACCGTGAAGCTTGACATCTGGGACACCGCCGGCCAAGAACGCTACC
ACAGCCTTGCGCCCATGTACTACCGCGGCGCGGCCGCCGCTGTCGTCGTCTACGACATCTCCAGCACGGATTCTTACATT
CGAGCAAGGAAGTGGGTCGACGAACTCCAGAGACAAGGGAATCCACATTTGGTGATGGCATTAGTGGGCAACAAGGTCGA
CCTGGAAGAAAAGAGGCAGGTTGGAACGCAGGAGGCGATGGAATACGCAGAGCGAAACGGCCTCTTCTTCATAGAGACCT
CGGCCAAGACGTCGCAGAACGTCACCGAGCTCTTCTACGAACTAGGCAAGCACTACCGAAACAACTCTGTCGGATTCAAC
TCTCTGATGCATCGTCGCCTGATAATAACATCTACGTGTTGTTGCCAGCTGATAGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15969.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis