Browse Element(s) Details


Os.54309.1.S1_at

Description gb:AK103252.1
DB_XREF= gi:32988461
TID=Os.54309.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54309 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033123N15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033123N15, full insert sequence.
FL= gb:AK103252.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4721011/11Peptidase family M3 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47170OsAffx.22461.3.S1_x_at11/116+28601041..28604023hypothetical protein
LOC_Os06g47170OsAffx.22461.2.S1_x_at4/116+28601041..28604023hypothetical protein
LOC_Os06g47180NANA6+28606081..28610082retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g47190NANA6+28610401..28611962retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g47200Os.11393.1.S2_at11/116+28616449..28619312Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g47200Os.11393.1.S1_at11/116+28616449..28619312Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g47210Os.54309.1.S1_at11/116+28619995..28627008Peptidase family M3 containing protein, expressed
LOC_Os06g47220OsAffx.5134.1.S1_at10/116+28628473..28630394expressed protein
LOC_Os06g47220OsAffx.30891.1.S1_x_at2/116+28628473..28630394expressed protein
LOC_Os06g47230Os.12237.1.S1_a_at11/116+28638397..28640586expressed protein
LOC_Os06g47230Os.12237.2.S1_a_at11/116+28638397..28640586expressed protein
LOC_Os06g47240Os.57160.1.S1_at3/116+28641657..28641960hypothetical protein
LOC_Os06g47250OsAffx.15968.1.S1_at11/116+28643142..28647822expressed protein
LOC_Os06g47260OsAffx.15969.1.S1_at11/116+28650190..28651600Ras-related protein RHN1, putative, expressed
LOC_Os06g47270Os.50815.1.S1_at11/116+28651795..28653125Zinc finger, C3HC4 type family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004222molecular_functionmetalloendopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54309.1.S1_at--626--5231Chr06:28626462..28626486 (25 bp)
GAATAATCCCTGACATTAGCTCCTT
LOC_Os06g47210
Os.54309.1.S1_at--804--8891Chr06:28626587..28626611 (25 bp)
TGAGTCAGGAGCTTGATCTGCCACA
LOC_Os06g47210
Os.54309.1.S1_at--107--1251Chr06:28626714..28626738 (25 bp)
AGTTGGGTGGATCCTGTTTGACCAT
LOC_Os06g47210
Os.54309.1.S1_at--677--6851Chr06:28626729..28626753 (25 bp)
GTTTGACCATTGCTGAATCTTCGAT
LOC_Os06g47210
Os.54309.1.S1_at--240--3651Chr06:28626747..28626771 (25 bp)
CTTCGATTTTAACTTGCTGCTGCTG
LOC_Os06g47210
Os.54309.1.S1_at--296--6711Chr06:28626791..28626815 (25 bp)
GTTCCCTGTCAGATGATTTTTCGCA
LOC_Os06g47210
Os.54309.1.S1_at--548--10271Chr06:28626809..28626833 (25 bp)
TTTCGCATTTACTCCGATTGTTCGG
LOC_Os06g47210
Os.54309.1.S1_at--14--7551Chr06:28626857..28626881 (25 bp)
GTGGCTGTGCCTGTAATATTGACCC
LOC_Os06g47210
Os.54309.1.S1_at--534--1011Chr06:28626882..28626906 (25 bp)
AGGTTAATCTTCATAGCCCATCACA
LOC_Os06g47210
Os.54309.1.S1_at--230--6271Chr06:28626942..28626966 (25 bp)
GATGTGCCCATATGATCTTTTTTGC
LOC_Os06g47210
Os.54309.1.S1_at--448--4951Chr06:28626965..28626989 (25 bp)
GCATTCTTAGTTGGTCTCATGGATA
LOC_Os06g47210
Target Sequence 
GAATAATCCCTGACATTAGCTCCTTGTGTAAAGAAGTCGGTTTGTGAAATACCATTGGGAGTGGAGATTGGGATCATTAT
TTTTGACATTGAGATGGGTTAAAGGGTCAAAGACTCATGATATCATGAGTCAGGAGCTTGATCTGCCACAGGGCTGCAGG
ATCTAGTTGAAGGTCAAGCTGAAAAAAATAATAGTAGATTCTTGACAAAGAACTGATGAATTGGTTCTCAATACAGGATT
GCAGGTTAGATTAGTTGGGTGGATCCTGTTTGACCATTGCTGAATCTTCGATTTTAACTTGCTGCTGCTGCTGCTGCAAG
GGTGGTTTAGTTCCCTGTCAGATGATTTTTCGCATTTACTCCGATTGTTCGGAACTGTTGTTCCAAAGCTACAAAGTGGC
TGTGCCTGTAATATTGACCCAGGTTAATCTTCATAGCCCATCACATGTAATAGTTCTCTAAAGTGATTATAAGAGTGAGA
GATGTGCCCATATGATCTTTTTTGCATTCTTAGTTGGTCTCATGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54309.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis