Browse Element(s) Details

Os.11393.1.S1_at

Description

gb:AK063215.1
DB_XREF= gi:32973233
TID=Os.11393.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11393 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023026H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-D11, full insert sequence.
FL= gb:AK069702.1 gb:AK063215.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g47200	11/11	Protease inhibitor/seed storage/LTP family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g47160	NA	NA	6	+	28592052..28594822	hypothetical protein
LOC_Os06g47170	OsAffx.22461.3.S1_x_at	11/11	6	+	28601041..28604023	hypothetical protein
LOC_Os06g47170	OsAffx.22461.2.S1_x_at	4/11	6	+	28601041..28604023	hypothetical protein
LOC_Os06g47180	NA	NA	6	+	28606081..28610082	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g47190	NA	NA	6	+	28610401..28611962	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g47200	Os.11393.1.S2_at	11/11	6	+	28616449..28619312	Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g47200	Os.11393.1.S1_at	11/11	6	+	28616449..28619312	Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g47210	Os.54309.1.S1_at	11/11	6	+	28619995..28627008	Peptidase family M3 containing protein, expressed
LOC_Os06g47220	OsAffx.5134.1.S1_at	10/11	6	+	28628473..28630394	expressed protein
LOC_Os06g47220	OsAffx.30891.1.S1_x_at	2/11	6	+	28628473..28630394	expressed protein
LOC_Os06g47230	Os.12237.1.S1_a_at	11/11	6	+	28638397..28640586	expressed protein
LOC_Os06g47230	Os.12237.2.S1_a_at	11/11	6	+	28638397..28640586	expressed protein
LOC_Os06g47240	Os.57160.1.S1_at	3/11	6	+	28641657..28641960	hypothetical protein
LOC_Os06g47250	OsAffx.15968.1.S1_at	11/11	6	+	28643142..28647822	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006869	biological_process	lipid transport
GO:0031225	cellular_component	anchored to membrane
GO:0004675	molecular_function	transmembrane receptor protein serine/threonine kinase activity
GO:0008289	molecular_function	lipid binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.11393.1.S1_at--664--243	1	Chr06:28616517..28616541 (25 bp)	AAAAGGCACCACCTTTGCTCGGTGC	LOC_Os06g47200
Os.11393.1.S1_at--1133--917	1	Chr06:28616689..28616713 (25 bp)	TGCCGTGCGCGCAGTACATGAACGG	LOC_Os06g47200
Os.11393.1.S1_at--708--987	1	Chr06:28616703..28616727 (25 bp)	TACATGAACGGGACGGACACGCCGC	LOC_Os06g47200
Os.11393.1.S1_at--935--157	1	Chr06:28616770..28616794 (25 bp)	AGCTCAAGTGCCTCTGCGACCTCTA	LOC_Os06g47200
Os.11393.1.S1_at--1145--425	1	Chr06:28616802..28616826 (25 bp)	CCGGAGATCTTCAAGGCCTTCAACA	LOC_Os06g47200
Os.11393.1.S1_at--831--349	1	Chr06:28616885..28616909 (25 bp)	CATGTGCCCCGGTAACCAACTTATT	LOC_Os06g47200
Os.11393.1.S1_at--820--559	1	Chr06:28616994..28617018 (25 bp)	GAAATTATCACCGTGGCATCGATCA	LOC_Os06g47200
Os.11393.1.S1_at--535--425	1	Chr06:28617004..28617028 (25 bp)	CCGTGGCATCGATCATGAGTTGTTA	LOC_Os06g47200
Os.11393.1.S1_at--698--785	1	Chr06:28617043..28617067 (25 bp)	GGTATCCAAAAACTCACCCAAATAG	LOC_Os06g47200
Os.11393.1.S1_at--718--153	1	Chr06:28617066..28617090 (25 bp)	AGCATGATTTGACTGTTCCTACACT	LOC_Os06g47200
Os.11393.1.S1_at--1087--523	1	Chr06:28617091..28617115 (25 bp)	GAATAAATATGAGGCCTTGTTCTTG	LOC_Os06g47200

Target Sequence

AAAAGGCACCACCTTTGCTCGGTGCTCGTGGGGGAGAGAGAGAGAGAGAGACAGATGGCGACGCGGATGGCTGCGGCGGT
GGCGGCCATGGTGGCGGCTGTGGCGATCTCGCTGGCGGCGGGCGGGGCGGCGCAGTCGTCGCCGAGCACGCCGAGCTGCG
CGTCGAAGCTGGTGCCGTGCGCGCAGTACATGAACGGGACGGACACGCCGCCGGCGGCGTGCTGCGACCCGCTCAAGGAG
GCGGTGAAGAACGAGCTCAAGTGCCTCTGCGACCTCTACGCCTCGCCGGAGATCTTCAAGGCCTTCAACATCAACATCTC
CGACGCCCTCCGCCTCTCCACGCGGTGCGGCATCAGCCAGACCACCAGCATGTGCCCCGGTAACCAACTTATTTTACCCT
CCTCCTCCTCCTTCTATCCCTTGTTCTTTTAACAGCAAAAGAGAGAGAGAGAGAGAGAGAATATGTTGTTTTTGATAGAA
ATTATCACCGTGGCATCGATCATGAGTTGTTAATTTTTGTAATATTGGTATCCAAAAACTCACCCAAATAGCATGATTTG
ACTGTTCCTACACTGAATAAATATGAGGCCTTGTTCTTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis