Browse Element(s) Details


Os.11393.1.S2_at

Description gb:AK069702.1
DB_XREF= gi:32979726
TID=Os.11393.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11393 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023026H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023026H03, full insert sequence.
FL= gb:AK069702.1 gb:AK063215.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4720011/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47160NANA6+28592052..28594822hypothetical protein
LOC_Os06g47170OsAffx.22461.3.S1_x_at11/116+28601041..28604023hypothetical protein
LOC_Os06g47170OsAffx.22461.2.S1_x_at4/116+28601041..28604023hypothetical protein
LOC_Os06g47180NANA6+28606081..28610082retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g47190NANA6+28610401..28611962retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g47200Os.11393.1.S2_at11/116+28616449..28619312Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g47200Os.11393.1.S1_at11/116+28616449..28619312Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g47210Os.54309.1.S1_at11/116+28619995..28627008Peptidase family M3 containing protein, expressed
LOC_Os06g47220OsAffx.5134.1.S1_at10/116+28628473..28630394expressed protein
LOC_Os06g47220OsAffx.30891.1.S1_x_at2/116+28628473..28630394expressed protein
LOC_Os06g47230Os.12237.1.S1_a_at11/116+28638397..28640586expressed protein
LOC_Os06g47230Os.12237.2.S1_a_at11/116+28638397..28640586expressed protein
LOC_Os06g47240Os.57160.1.S1_at3/116+28641657..28641960hypothetical protein
LOC_Os06g47250OsAffx.15968.1.S1_at11/116+28643142..28647822expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0031225cellular_componentanchored to membrane
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11393.1.S2_at--132--2851Chr06:28617815..28617839 (25 bp)
AAGTCACACCAGTTCGCTACTATAT
LOC_Os06g47200
Os.11393.1.S2_at--387--5151Chr06:28617852..28617876 (25 bp)
GCAACCGTCCTTTTCCTTAGATAAT
LOC_Os06g47200
Os.11393.1.S2_at--79--10271Chr06:28617927..28617951 (25 bp)
TTTGCAGGGAATTCCCCTACGAACT
LOC_Os06g47200
Os.11393.1.S2_at--24--3391Chr06:28619000..28619024 (25 bp)
CAGCCTCTCCATCAGGTGGCAAAAA
LOC_Os06g47200
Os.11393.1.S2_at--245--2431Chr06:28619021..28619045 (25 bp)
AAAACGCTGGTCATCGCACTATGTC
LOC_Os06g47200
Os.11393.1.S2_at--593--5111Chr06:28619036..28619060 (25 bp)
GCACTATGTCAGTTGGTCTTCCAGG
LOC_Os06g47200
Os.11393.1.S2_at--375--10771Chr06:28619062..28619086 (25 bp)
TTGATGAGCTTGTTCCTAGCGTTGT
LOC_Os06g47200
Os.11393.1.S2_at--793--3711Chr06:28619077..28619101 (25 bp)
CTAGCGTTGTGGTCTGTATTGGCAT
LOC_Os06g47200
Os.11393.1.S2_at--574--6031Chr06:28619123..28619147 (25 bp)
GAGATGTTATCGCTTATGCCACAGT
LOC_Os06g47200
Os.11393.1.S2_at--699--6611Chr06:28619176..28619200 (25 bp)
GATTGGCTGTATCATCATTCTGTAC
LOC_Os06g47200
Os.11393.1.S2_at--636--7411Chr06:28619257..28619281 (25 bp)
GTGTTGTACTTAGACCTGTGCTGAT
LOC_Os06g47200
Target Sequence 
AAGTCACACCAGTTCGCTACTATATCTGNTGTATTTGGCAACCGTCCTTTTCCTTAGATAATTNTAATACATATATTTGT
ATGGNTTTCTGATAAGTGTCCTACAATAATATTTTGCAGGGAATTCCCCTACGAACTCTCCTCCAGCCTCTCCATCAGGT
GGCAAAAACGCTGGTCATCGCACTATGTCAGTTGGTCTTCCAGGATTGATGAGCTTGTTCCTAGCGTTGTGGTCTGTATT
GGCATAAGAATTTTGGTTCCATATCAGAGATGTTATCGCTTATGCCACAGTAGAGGATTTACATGTGACGGTGTTTGTTG
ATTGGCTGTATCATCATTCTGTACTTGGATCAGAATTCGTTTTGCTGTGTATCAATGTCGCAAGTCAGAAGACTTACATT
GTGTTGTACTTAGACCTGTGCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11393.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis