Browse Element(s) Details

OsAffx.5134.1.S1_at

Description

tigr:9634.m04600
TID=OsAffx.5134.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g47220	10/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g47170	OsAffx.22461.3.S1_x_at	11/11	6	+	28601041..28604023	hypothetical protein
LOC_Os06g47170	OsAffx.22461.2.S1_x_at	4/11	6	+	28601041..28604023	hypothetical protein
LOC_Os06g47180	NA	NA	6	+	28606081..28610082	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g47190	NA	NA	6	+	28610401..28611962	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g47200	Os.11393.1.S2_at	11/11	6	+	28616449..28619312	Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g47200	Os.11393.1.S1_at	11/11	6	+	28616449..28619312	Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g47210	Os.54309.1.S1_at	11/11	6	+	28619995..28627008	Peptidase family M3 containing protein, expressed
LOC_Os06g47220	OsAffx.5134.1.S1_at	10/11	6	+	28628473..28630394	expressed protein
LOC_Os06g47220	OsAffx.30891.1.S1_x_at	2/11	6	+	28628473..28630394	expressed protein
LOC_Os06g47230	Os.12237.1.S1_a_at	11/11	6	+	28638397..28640586	expressed protein
LOC_Os06g47230	Os.12237.2.S1_a_at	11/11	6	+	28638397..28640586	expressed protein
LOC_Os06g47240	Os.57160.1.S1_at	3/11	6	+	28641657..28641960	hypothetical protein
LOC_Os06g47250	OsAffx.15968.1.S1_at	11/11	6	+	28643142..28647822	expressed protein
LOC_Os06g47260	OsAffx.15969.1.S1_at	11/11	6	+	28650190..28651600	Ras-related protein RHN1, putative, expressed
LOC_Os06g47270	Os.50815.1.S1_at	11/11	6	+	28651795..28653125	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g47280	OsAffx.28146.1.S1_at	11/11	6	+	28653840..28655981	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.5134.1.S1_at--1088--519	1	NONE	GAATTGTCAGATAATGCCATTGGTA	NONE
OsAffx.5134.1.S1_at--464--303	1	Chr06:28629045..28629069 (25 bp)	AATGCCATTGGTATGATCAAAAAGC	LOC_Os06g47220
OsAffx.5134.1.S1_at--375--273	1	Chr06:28629024..28629048 (25 bp)	AAGCAAGGGTTCATCCTTTCTGGTC	LOC_Os06g47220
OsAffx.5134.1.S1_at--403--289	1	Chr06:28629020..28629044 (25 bp)	AAGGGTTCATCCTTTCTGGTCAGAA	LOC_Os06g47220
OsAffx.5134.1.S1_at--344--767	1	Chr06:28629018..28629042 (25 bp)	GGGTTCATCCTTTCTGGTCAGAAAA	LOC_Os06g47220
OsAffx.5134.1.S1_at--1162--211	1	Chr06:28628989..28629013 (25 bp)	ACAGACAGGGTCAACTTTAGAATAC	LOC_Os06g47220
OsAffx.5134.1.S1_at--199--709	1	Chr06:28628980..28629004 (25 bp)	GTCAACTTTAGAATACCCATACAAC	LOC_Os06g47220
OsAffx.5134.1.S1_at--906--1043	1	Chr06:28628975..28628997 (23 bp)	TTAGAATACCCATACAACCCAAGTG	LOC_Os06g47220
OsAffx.5134.1.S1_at--1032--307	1	Chr06:28628577..28628993 (25 bp)	AATACCCATACAACCCAAGTGGCGG	LOC_Os06g47220
OsAffx.5134.1.S1_at--263--33	1	Chr06:28628764..28628986 (25 bp)	ATACAACCCAAGTGGCGGCGTGGTC	LOC_Os06g47220
OsAffx.5134.1.S1_at--778--421	1	Chr06:28628630..28628654 (25 bp)	CCGCCGCGAAGTCGTACAGCTTCAA	LOC_Os06g47220

Target Sequence

GAATTGTCAGATAATGCCATTGGTATGATCAAAAAGCAAGGGTTCATCCTTTCTGGTCAGAAAAAAGAACAGACAGGGTC
AACTTTAGAATACCCATACAACCCAAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAGC
ACTCGGCGGCGTACTACGGCTGCGGCGGCGGGTACGACTACGAGGACGTGAGCGGAGGCGGCGGCGGCGCCGCCGCGAAG
TCGTACAGCTTCAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis