Browse Element(s) Details


Os.24780.1.A1_a_at

Description gb:AK072400.1
DB_XREF= gi:32982423
TID=Os.24780.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24780 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023078C17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078C17, full insert sequence.
FL= gb:AK072400.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4729011/11Plant protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47230Os.12237.1.S1_a_at11/116+28638397..28640586expressed protein
LOC_Os06g47230Os.12237.2.S1_a_at11/116+28638397..28640586expressed protein
LOC_Os06g47240Os.57160.1.S1_at3/116+28641657..28641960hypothetical protein
LOC_Os06g47250OsAffx.15968.1.S1_at11/116+28643142..28647822expressed protein
LOC_Os06g47260OsAffx.15969.1.S1_at11/116+28650190..28651600Ras-related protein RHN1, putative, expressed
LOC_Os06g47270Os.50815.1.S1_at11/116+28651795..28653125Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g47280OsAffx.28146.1.S1_at11/116+28653840..28655981hypothetical protein
LOC_Os06g47290Os.24780.1.A1_a_at11/116+28657267..28661112Plant protein family protein, expressed
LOC_Os06g47300Os.27428.1.S1_at11/116+28669241..28673824RNA-binding protein, putative, expressed
LOC_Os06g47300OsAffx.13466.1.S1_at1/116+28669241..28673824RNA-binding protein, putative, expressed
LOC_Os06g47310OsAffx.28147.1.S1_at2/116+28678748..28679747uncharacterized plant-specific domain TIGR01627 family protein
LOC_Os06g47320Os.11699.1.S1_at10/116+28681054..28686080T-complex protein 1, eta subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24780.1.A1_a_at--473--5171Chr06:28658333..28658357 (25 bp)
GCAATAGAATGGCTCCGCTAAGGAA
LOC_Os06g47290
Os.24780.1.A1_a_at--128--5231Chr06:28658315..28658335 (21 bp)
GAATATGTTCCCCAATTTGGTTACA
LOC_Os06g47290
Os.24780.1.A1_a_at--122--5391Chr06:28657747..28657771 (25 bp)
GAAGCATGTGACCAGCCTTGCTGCA
LOC_Os06g47290
Os.24780.1.A1_a_at--708--9111Chr06:28657729..28657753 (25 bp)
TGCTGCATTGGACTTCCTGGTTTGC
LOC_Os06g47290
Os.24780.1.A1_a_at--1024--4251Chr06:28657714..28657738 (25 bp)
CCTGGTTTGCCTGAAATCGGACGTG
LOC_Os06g47290
Os.24780.1.A1_a_at--579--3051Chr06:28657700..28657724 (25 bp)
AATCGGACGTGTTCGTCATGACCCA
LOC_Os06g47290
Os.24780.1.A1_a_at--1143--191Chr06:28657667..28657691 (25 bp)
ATTTCGCCAAGCTGATCATCGGTTT
LOC_Os06g47290
Os.24780.1.A1_a_at--176--9451Chr06:28657627..28657651 (25 bp)
TCGGCATCGGCTCAAGTCTATCAAG
LOC_Os06g47290
Os.24780.1.A1_a_at--568--3531Chr06:28657561..28657585 (25 bp)
CATGCCATGGGCAACTTTCGTGGAG
LOC_Os06g47290
Os.24780.1.A1_a_at--1075--8851Chr06:28657532..28657556 (25 bp)
TGATGATCACTCACCAGACACGAAC
LOC_Os06g47290
Os.24780.1.A1_a_at--408--4311Chr06:28657459..28657483 (25 bp)
CCTTACGCCTTGCATGTGTAGAGCT
LOC_Os06g47290
Target Sequence 
GCAATAGAATGGCTCCGCTAAGGAATATGTTCCCCAATTTGGTTACAAAAGAAGATCTTGCAAGCAAAGAGGAGATAGAA
CACTTCAAGAAGCATGTGACCAGCCTTGCTGCATTGGACTTCCTGGTTTGCCTGAAATCGGACGTGTTCGTCATGACCCA
CGGTGGCAATTTCGCCAAGCTGATCATCGGTTTCCGCCGCTACATGGGTCGGCATCGGCTCAAGTCTATCAAGCCAGACA
AGGGCCTCATGTCCAAGTTNTTCGGCGATCCCTACATGCCATGGGCAACTTTCGTGGAGGATGTGATGATCACTCACCAG
ACACGAACTGGCCTCCCTGAGTCCACATTCCCACACTACGACCTCTGGGAAAACCCCCTTACGCCTTGCATGTGTAGAGC
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24780.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis