Browse Element(s) Details

Os.14107.1.S1_at

Description

gb:AK072593.1
DB_XREF= gi:32982616
TID=Os.14107.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14107 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023133F22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133F22, full insert sequence.
FL= gb:AK072593.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g47330	11/11	EH-domain containing protein 2, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g47300	Os.27428.1.S1_at	11/11	6	+	28669241..28673824	RNA-binding protein, putative, expressed
LOC_Os06g47300	OsAffx.13466.1.S1_at	1/11	6	+	28669241..28673824	RNA-binding protein, putative, expressed
LOC_Os06g47310	OsAffx.28147.1.S1_at	2/11	6	+	28678748..28679747	uncharacterized plant-specific domain TIGR01627 family protein
LOC_Os06g47320	Os.11699.1.S1_at	10/11	6	+	28681054..28686080	T-complex protein 1, eta subunit, putative, expressed
LOC_Os06g47330	Os.14107.1.S1_at	11/11	6	+	28687839..28693004	EH-domain containing protein 2, putative, expressed
LOC_Os06g47340	Os.425.1.S1_s_at	11/11	6	+	28693933..28697428	glycosyltransferase, putative, expressed
LOC_Os06g47350	Os.9229.3.S1_x_at	11/11	6	+	28698611..28705482	RNA polymerase I specific transcription initiation factor RRN3 family protein, expressed
LOC_Os06g47350	Os.9229.2.S1_x_at	10/11	6	+	28698611..28705482	RNA polymerase I specific transcription initiation factor RRN3 family protein, expressed
LOC_Os06g47360	OsAffx.15971.1.S1_x_at	9/11	6	+	28706293..28707351	Expansin-related protein 2 precursor, putative, expressed
LOC_Os06g47360	OsAffx.15971.1.S1_at	9/11	6	+	28706293..28707351	Expansin-related protein 2 precursor, putative, expressed
LOC_Os06g47370	NA	NA	6	+	28709015..28711976	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g47380	Os.10703.2.S1_x_at	1/11	6	+	28712293..28718382	retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification

GO id	Type	Name
GO:0005509	molecular_function	calcium ion binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.14107.1.S1_at--565--447	1	Chr06:28691976..28692000 (25 bp)	GCCTGCGATGATGGGCAAAGCCAAA	LOC_Os06g47330
Os.14107.1.S1_at--919--761	1	Chr06:28692511..28692535 (25 bp)	GGGAACAACATCTTCCAGCTGGAGA	LOC_Os06g47330
Os.14107.1.S1_at--872--803	1	Chr06:28692531..28692555 (25 bp)	GGAGATTTCCCTTATGTGGAGCATT	LOC_Os06g47330
Os.14107.1.S1_at--200--155	1	Chr06:28692550..28692574 (25 bp)	AGCATTTCAGAGATGTCCTGGGTGG	LOC_Os06g47330
Os.14107.1.S1_at--597--795	1	Chr06:28692639..28692663 (25 bp)	GGATACGACATTCCAGAACTCCTCA	LOC_Os06g47330
Os.14107.1.S1_at--227--963	1	Chr06:28692670..28692694 (25 bp)	TCAGGAACCCATACGAGTGAATGAA	LOC_Os06g47330
Os.14107.1.S1_at--382--597	1	Chr06:28692740..28692764 (25 bp)	GAGACTAGTCATATTCGGAGGGAAT	LOC_Os06g47330
Os.14107.1.S1_at--1002--1067	1	Chr06:28692779..28692803 (25 bp)	TTCCATAGTTTTGCAACTGTCAGAA	LOC_Os06g47330
Os.14107.1.S1_at--158--863	1	Chr06:28692816..28692840 (25 bp)	TGAGGTTTAGGTCTTGTAACTCTTG	LOC_Os06g47330
Os.14107.1.S1_at--878--997	1	Chr06:28692865..28692889 (25 bp)	TACCTTGTTGTATAACTGCATGCAT	LOC_Os06g47330
Os.14107.1.S1_at--598--523	1	Chr06:28692976..28693000 (25 bp)	GAATATGACGCACATCGTCTTTTGT	LOC_Os06g47330

Target Sequence

GCCTGCGATGATGGGCAAAGCCAAAGCTCAGCNGCGACTTNNTAGACAATTTGGAGAATGAGTTCGCAAAGNTCCAAAGG
GAACAACATCTTCCAGCTGGAGATTTCCCTTATGTGGAGCATTTCAGAGATGTCCTGGGTGGGNNTANNNNTGACAAGTT
TGAGAAAATCAAGCCCANAGATGGTGCANGGCGGTGGATGATATGCTTGGATACGACATTCCAGAACTCCTCANAGAACT
TCAGGAACCCATACGAGTGAATGAACACCTTTANAATTATNGACCNTGGTTTTCAACTTTNTTATCANTGATGAGAGACT
AGTCATATTCGGAGGGAATAGGGATGCGCTGCANTTCCATAGTTTTGCAACTGTCAGAAATCTGGGANTTNCTGAGGTTT
AGGTCTTGTAACTCTTGTAGGGCGNTTTATTGTGGCATACTNTACCTTGTTGTATAACTGCATGCATAAGAATCTGAGAG
CCNTTGCNTCAATTCTTTTCAACGAAGATGTGAACTNTTGGAAGNCNATNNTAAACGGGAAGCGCTGTATGAAAGAATAT
GACGCACATCGTCTTTTGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis