Browse Element(s) Details


OsAffx.16291.1.S1_at

Description tigr:9635.m01622
TID=OsAffx.16291.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1625011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g16224OsAffx.5347.1.S1_at11/117+9458856..9466413Piwi domain containing protein, expressed
LOC_Os07g16224Os.19635.1.S1_at10/117+9458856..9466413Piwi domain containing protein, expressed
LOC_Os07g16240NANA7+9473500..9477231retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16250OsAffx.16291.1.S1_at11/117+9484464..9485045hypothetical protein
LOC_Os07g16260OsAffx.16292.1.S1_at11/117+9488743..9489156hypothetical protein
LOC_Os07g16270OsAffx.5348.1.S1_at11/117+9491882..9492265hypothetical protein
LOC_Os07g16280NANA7+9496578..9497173hypothetical protein
LOC_Os07g16290Os.40360.1.S1_at9/117+9506324..9508943hypothetical protein
LOC_Os07g16290Os.40360.1.S1_x_at4/117+9506324..9508943hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16291.1.S1_at--607--5291Chr07:9484991..9485015 (25 bp)
GAAGGCCATTGTCCATCGCTCATTG
LOC_Os07g16250
OsAffx.16291.1.S1_at--191--1151Chr07:9484929..9484953 (25 bp)
AGTCCGCGATGAAGCCTGTGAGTAC
LOC_Os07g16250
OsAffx.16291.1.S1_at--677--8111Chr07:9484901..9484925 (25 bp)
GGACTTGACAACAGTTCCTGGGATA
LOC_Os07g16250
OsAffx.16291.1.S1_at--263--8231Chr07:9484838..9484862 (25 bp)
GGCAATGCATCATGTGACTTCTTTA
LOC_Os07g16250
OsAffx.16291.1.S1_at--546--10551Chr07:9484724..9484826 (25 bp)
TTCTCAGATATGCAGTTTCCGGACA
LOC_Os07g16250
OsAffx.16291.1.S1_at--538--7811Chr07:9484688..9484712 (25 bp)
GGTCTTGTCATCGTGAAGTACTTCA
LOC_Os07g16250
OsAffx.16291.1.S1_at--648--7571Chr07:9484648..9484672 (25 bp)
GGGCGTTGTATTTTGTCACCCTCGA
LOC_Os07g16250
OsAffx.16291.1.S1_at--598--4191Chr07:9484630..9484654 (25 bp)
CCCTCGACAATGATGACGGTGCTGA
LOC_Os07g16250
OsAffx.16291.1.S1_at--394--5331Chr07:9484577..9484601 (25 bp)
GAAGAGTTCCTCCTTTGGCTTTGGG
LOC_Os07g16250
OsAffx.16291.1.S1_at--753--6151Chr07:9484529..9484553 (25 bp)
GAGGTATCGCTTAAGTGCGCCGAAC
LOC_Os07g16250
OsAffx.16291.1.S1_at--613--2631Chr07:9484496..9484520 (25 bp)
AACCTCAGATGTCCACTCGAACTTG
LOC_Os07g16250
Target Sequence 
GAAGGCCATTGTCCATCGCTCATTGTCCGTTCGGTCGACTTTGCCATCCTCGGGGATGGTCCAGTCCGCGATGAAGCCTG
TGAGTACCTAGGACTTGACAACAGTTCCTGGGATAAAGTGGACATCGAATTGGCTAAGCTTGATGACCCATTTGGCAATG
CATCATGTGACTTCTTTATTGAGAACAACTTCTCAGATATGCAGTTTCCGGACATGTGGATATTTGGTCTTGTCATCGTG
AAGTACTTCACTGACATAATAAACTGGGCGTTGTATTTTGTCACCCTCGACAATGATGACGGTGCTGATGGAGCAAGGTG
TTGTGGCAATATAGAGGAAGAGTTCCTCCTTTGGCTTTGGGGCAACGAGCACGGGTGGATTTGCGAGGTATCGCTTAAGT
GCGCCGAACACCTCCTCAACCTCAGATGTCCACTCGAACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16291.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis