Browse Element(s) Details


Os.19635.1.S1_at

Description gb:AY323483.1
DB_XREF= gi:33087070
GEN=ZP1
TID=Os.19635.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19635 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) zwille pinhead-like protein (ZP1) mRNA, complete cds.
PROD=zwille pinhead-like protein
FL= gb:AK101842.1 gb:AY323483.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1622410/11Piwi domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g16190Os.45902.1.A1_x_at4/117+9433409..9436160retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g16190OsAffx.10222.1.S1_x_at2/117+9433409..9436160retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g16190Os.56372.1.S1_at1/117+9433409..9436160retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g16210OsAffx.16290.2.A1_at11/117+9453245..9454848hypothetical protein
LOC_Os07g16210OsAffx.30582.1.S1_s_at4/117+9453245..9454848hypothetical protein
LOC_Os07g16224OsAffx.5347.1.S1_at11/117+9458856..9466413Piwi domain containing protein, expressed
LOC_Os07g16224Os.19635.1.S1_at10/117+9458856..9466413Piwi domain containing protein, expressed
LOC_Os07g16240NANA7+9473500..9477231retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16250OsAffx.16291.1.S1_at11/117+9484464..9485045hypothetical protein
LOC_Os07g16260OsAffx.16292.1.S1_at11/117+9488743..9489156hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006342biological_processchromatin silencing
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009965biological_processleaf morphogenesis
GO:0016441biological_processposttranscriptional gene silencing
GO:0035195biological_processmiRNA-mediated gene silencing
GO:0005737cellular_componentcytoplasm
GO:0004521molecular_functionendoribonuclease activity
GO:0035197molecular_functionsiRNA binding
GO:0035198molecular_functionmiRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19635.1.S1_at--836--10071NONE
TAGTGTGCAGCAGGGCTTGATCCTT
NONE
Os.19635.1.S1_at--949--3611Chr07:9459052..9459076 (25 bp)
CTTGTTAGGCACTTTTGTAGTACTC
LOC_Os07g16224
Os.19635.1.S1_at--416--8251Chr07:9459045..9459069 (25 bp)
GGCACTTTTGTAGTACTCTAGATTG
LOC_Os07g16224
Os.19635.1.S1_at--1061--10031Chr07:9458977..9459001 (25 bp)
TAGATGATATAGTGCTCCTAATGAT
LOC_Os07g16224
Os.19635.1.S1_at--556--7311Chr07:9458966..9458990 (25 bp)
GTGCTCCTAATGATATAGTTCTGTT
LOC_Os07g16224
Os.19635.1.S1_at--121--1231Chr07:9458950..9458974 (25 bp)
AGTTCTGTTAGTGCTCAGCTATTAG
LOC_Os07g16224
Os.19635.1.S1_at--835--5311Chr07:9458925..9458949 (25 bp)
GAAGTAAAGGCTTACCCTTGATGGT
LOC_Os07g16224
Os.19635.1.S1_at--1019--8231Chr07:9458917..9458941 (25 bp)
GGCTTACCCTTGATGGTAGGTTTAT
LOC_Os07g16224
Os.19635.1.S1_at--101--131Chr07:9458890..9458914 (25 bp)
ATTCAAGACGCTAACTTTGCGCCAT
LOC_Os07g16224
Os.19635.1.S1_at--810--9811Chr07:9458879..9458903 (25 bp)
TAACTTTGCGCCATATCTAATTGTC
LOC_Os07g16224
Os.19635.1.S1_at--997--7071Chr07:9458857..9458881 (25 bp)
GTCAACCAGTTAAACAGATGATTCG
LOC_Os07g16224
Target Sequence 
TAGTGTGCAGCAGGGCTTGATCCTTCTTTTTTTTTTTGAAGGAACCAAATNCGGAGTNCTTGTTAGGCACTTTTGTAGTA
CTCTAGATTGATACTATGAGATACATNTAGGTTGGGTAGGGAGCATTTTTTTTTAGATGATATAGTGCTCCTAATGATAT
AGTTCTGTTAGTGCTCAGCTATTAGGAAGTAAAGGCTTACCCTTGATGGTAGGTTTATGAATTCAAGACGCTAACTTTGC
GCCATATCTAATTGTCAACCAGTTAAACAGATGATTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19635.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis