Browse Element(s) Details


OsAffx.16290.2.A1_at

Description tigr:9635.m01618
TID=OsAffx.16290.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1621011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g16180OsAffx.28474.1.S1_at11/117+9428038..9428277hypothetical protein
LOC_Os07g16190Os.45902.1.A1_x_at4/117+9433409..9436160retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g16190OsAffx.10222.1.S1_x_at2/117+9433409..9436160retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g16190Os.56372.1.S1_at1/117+9433409..9436160retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g16210OsAffx.16290.2.A1_at11/117+9453245..9454848hypothetical protein
LOC_Os07g16210OsAffx.30582.1.S1_s_at4/117+9453245..9454848hypothetical protein
LOC_Os07g16224OsAffx.5347.1.S1_at11/117+9458856..9466413Piwi domain containing protein, expressed
LOC_Os07g16224Os.19635.1.S1_at10/117+9458856..9466413Piwi domain containing protein, expressed
LOC_Os07g16240NANA7+9473500..9477231retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16290.2.A1_at--1043--7651Chr07:9454588..9454611 (24 bp)
GGGATGTTACAACCTTGCACTATCA
LOC_Os07g16210
OsAffx.16290.2.A1_at--953--2251Chr07:9454611..9454635 (25 bp)
AAATAGCATTCCCTTCTTTGGTTCT
LOC_Os07g16210
OsAffx.16290.2.A1_at--21--6752Chr07:9454631..9454655 (25 bp)
GTTCTTGTAACATAGCTTCCTCTGT
LOC_Os07g16210
OsAffx.16290.2.A1_at--467--2092Chr07:9454640..9454664 (25 bp)
ACATAGCTTCCTCTGTTGATTGCTC
LOC_Os07g16210
OsAffx.16290.2.A1_at--1143--6631Chr07:9454654..9454678 (25 bp)
GTTGATTGCTCATTTGAAACGAACT
LOC_Os07g16210
OsAffx.16290.2.A1_at--1027--5472Chr07:9454674..9454698 (25 bp)
GAACTTCTCAATTTCTTGGTCATCT
LOC_Os07g16210
OsAffx.16290.2.A1_at--66--3752Chr07:9454680..9454704 (25 bp)
CTCAATTTCTTGGTCATCTGATTCA
LOC_Os07g16210
OsAffx.16290.2.A1_at--1071--472Chr07:9454695..9454719 (25 bp)
ATCTGATTCATTTTGGACCTCCTCA
LOC_Os07g16210
OsAffx.16290.2.A1_at--1009--8531Chr07:9454708..9454732 (25 bp)
TGGACCTCCTCAACAATAAAATCAT
LOC_Os07g16210
OsAffx.16290.2.A1_at--1112--6492Chr07:9454741..9454765 (25 bp)
GATATGGCAATATCATCTTCTACTT
LOC_Os07g16210
OsAffx.16290.2.A1_at--525--31Chr07:9454779..9454803 (25 bp)
ATTGGTCTCCATTACTAAAACATGT
LOC_Os07g16210
Target Sequence 
GGGATGTTACAACCTTGCACTATCAAATAGCATTCCCTTCTTTGGTTCTTGTAACATAGCTTCCTCTGTTGATTGCTCAT
TTGAAACGAACTTCTCAATTTCTTGGTCATCTGATTCATTTTGGACCTCCTCAACAATAAAATCATCTTTGTCTGATATG
GCAATATCATCTTCTACTTCATTGGTAGATAAATTGGTCTCCATTACTAAAACATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16290.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis