Browse Element(s) Details


OsAffx.16292.1.S1_at

Description tigr:9635.m01623
TID=OsAffx.16292.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1626011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g16224OsAffx.5347.1.S1_at11/117+9458856..9466413Piwi domain containing protein, expressed
LOC_Os07g16224Os.19635.1.S1_at10/117+9458856..9466413Piwi domain containing protein, expressed
LOC_Os07g16240NANA7+9473500..9477231retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16250OsAffx.16291.1.S1_at11/117+9484464..9485045hypothetical protein
LOC_Os07g16260OsAffx.16292.1.S1_at11/117+9488743..9489156hypothetical protein
LOC_Os07g16270OsAffx.5348.1.S1_at11/117+9491882..9492265hypothetical protein
LOC_Os07g16280NANA7+9496578..9497173hypothetical protein
LOC_Os07g16290Os.40360.1.S1_at9/117+9506324..9508943hypothetical protein
LOC_Os07g16290Os.40360.1.S1_x_at4/117+9506324..9508943hypothetical protein
LOC_Os07g16299NANA7+9513219..9513466NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16292.1.S1_at--895--5771Chr07:9488785..9488809 (25 bp)
GACGAGGCAGCGGATATATTCCATT
LOC_Os07g16260
OsAffx.16292.1.S1_at--9--7611Chr07:9488820..9488844 (25 bp)
GGGCACCATCTGCATGACTAGTGAT
LOC_Os07g16260
OsAffx.16292.1.S1_at--373--10071Chr07:9488838..9488862 (25 bp)
TAGTGATGCCGCACGGAGCACGGAT
LOC_Os07g16260
OsAffx.16292.1.S1_at--332--3731Chr07:9488896..9488920 (25 bp)
CTACACATAGTGGAGGCCGGCAGTC
LOC_Os07g16260
OsAffx.16292.1.S1_at--1154--6211Chr07:9488927..9488951 (25 bp)
GATGGCCATTGCTCGTAGGTTCTGG
LOC_Os07g16260
OsAffx.16292.1.S1_at--58--6731Chr07:9488945..9488969 (25 bp)
GTTCTGGCACTTCCCATGTATATAT
LOC_Os07g16260
OsAffx.16292.1.S1_at--771--3111Chr07:9488989..9489013 (25 bp)
AATATTTTCACTACCGACTTCCTCT
LOC_Os07g16260
OsAffx.16292.1.S1_at--243--8791Chr07:9489020..9489044 (25 bp)
TGTTCCCAAACGGTGCCTTTACACA
LOC_Os07g16260
OsAffx.16292.1.S1_at--778--10251Chr07:9489058..9489082 (25 bp)
TTTCGAGGCCTCACCGTTCAAGAGG
LOC_Os07g16260
OsAffx.16292.1.S1_at--627--6751Chr07:9489073..9489097 (25 bp)
GTTCAAGAGGTCCTTGCTCCCCTAG
LOC_Os07g16260
OsAffx.16292.1.S1_at--628--9991Chr07:9489095..9489119 (25 bp)
TAGCCGCTGTGAGCCATGTAGGCTT
LOC_Os07g16260
Target Sequence 
GACGAGGCAGCGGATATATTCCATTTGGTGGACATGGGCACCATCTGCATGACTAGTGATGCCGCACGGAGCACGGATGG
CGCCAGTGGCAGCGTCGACAATGATGATGGGCTACACATAGTGGAGGCCGGCAGTCCAGGACGATGGCCATTGCTCGTAG
GTTCTGGCACTTCCCATGTATATATCCTTTGCTATTTAGTGCAAAATATTTTCACTACCGACTTCCTCTGCGTCTTGTTC
CCAAACGGTGCCTTTACACACCTCCTTTGTCACTTTCGAGGCCTCACCGTTCAAGAGGTCCTTGCTCCCCTAGCCGCTGT
GAGCCATGTAGGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16292.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis