Browse Element(s) Details


OsAffx.16305.1.S1_at

Description tigr:9635.m01725
TID=OsAffx.16305.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=EIN3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1716010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17130Os.54261.1.S1_at11/117+10062512..10066307Senescence-associated, putative, expressed
LOC_Os07g17140Os.47463.1.S1_x_at6/117+10068211..10073079transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17140Os.14491.2.S1_x_at5/117+10068211..10073079transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17150NANA7+10074553..10078366transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17160OsAffx.16305.1.S1_at10/117+10088952..10091708hypothetical protein
LOC_Os07g17160OsAffx.28486.1.S1_at1/117+10088952..10091708hypothetical protein
LOC_Os07g17170OsAffx.28486.1.S1_at10/117+10096061..10098251hypothetical protein
LOC_Os07g17180OsAffx.16306.1.S1_at11/117+10107914..10109731No apical meristem protein

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Gene Ontology Classification
GO idTypeName
GO:0009723biological_processresponse to ethylene stimulus
GO:0009873biological_processethylene mediated signaling pathway
GO:0010182biological_processsugar mediated signaling
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16305.1.S1_at--899--8431Chr07:10089800..10089824 (25 bp)
GGCCATCGAAGCCATGAGAAACAGC
LOC_Os07g17160
OsAffx.16305.1.S1_at--289--2911Chr07:10089828..10089852 (25 bp)
AAGGATCCAGATGCTCCGTACTATC
LOC_Os07g17160
OsAffx.16305.1.S1_at--681--4431Chr07:10089857..10089881 (25 bp)
GCCATCTCCACTTCATGGGCATAAT
LOC_Os07g17160
OsAffx.16305.1.S1_at--76--5351Chr07:10089882..10089906 (25 bp)
GAAGTTGGTCCAAATGATTACCCAG
LOC_Os07g17160
OsAffx.16305.1.S1_at--145--7831Chr07:10090219..10090243 (25 bp)
GGTCAGCTTGACTTGTTGCGAGTTG
LOC_Os07g17160
OsAffx.16305.1.S1_at--903--9931Chr07:10090299..10090323 (25 bp)
TAGCGGCCCCAGGAAGGGCTATCTT
LOC_Os07g17160
OsAffx.16305.1.S1_at--856--5211Chr07:10090351..10090375 (25 bp)
GAATATTATCGCGAACTACGGAACA
LOC_Os07g17160
OsAffx.16305.1.S1_at--1155--3711Chr07:10090366..10090390 (25 bp)
CTACGGAACAAAGGCGCCATGGCTA
LOC_Os07g17160
OsAffx.16305.1.S1_at--359--3451NONE
CATGGCTAGTGGTGCAGGTGTTAAA
NONE
OsAffx.16305.1.S1_at--436--2931Chr07:10091051..10091075 (25 bp)
AAGGCTAAGGCTAAGGCCAAGGCTA
LOC_Os07g17160
OsAffx.16305.1.S1_at--513--3211Chr07:10091068..10091092 (25 bp)
CAAGGCTAGAGCTGTGTATCAACAA
LOC_Os07g17160
Target Sequence 
GGCCATCGAAGCCATGAGAAACAGCAGCAAGGATCCAGATGCTCCGTACTATCCCATGCCATCTCCACTTCATGGGCATA
ATGAAGTTGGTCCAAATGATTACCCAGAAAACCCAGCAATCTGGAAGGAGTTCAACAGGAAAGAAGGTCAGCTTGACTTG
TTGCGAGTTGGCAAAAAGAATGACCGGATGGCGATATCCGATAGGGTGGATGGAGGAGCCAGTGGTAGCGGCCCCAGGAA
GGGCTATCTTGTGATGAAAACGTACAAAAAGGCTCAAGAATATTATCGCGAACTACGGAACAAAGGCGCCATGGCTAGTG
GTGCAGGTGTTAAAATTGAAGATGACAGTGAAACCGAGAGTGACAATGAAGATGAGAAGGCAAATGAGAAGGCTAAGGCT
AAGGCCAAGGCTAGAGCTGTGTATCAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis