Browse Element(s) Details


Os.54261.1.S1_at

Description gb:AK102876.1
DB_XREF= gi:32988085
TID=Os.54261.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54261 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033112D24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033112D24, full insert sequence.
FL= gb:AK102876.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1713011/11Senescence-associated, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17060OsAffx.5351.1.S1_at11/117+10039054..10039675hypothetical protein
LOC_Os07g17060Os.52249.2.S1_x_at1/117+10039054..10039675hypothetical protein
LOC_Os07g17070NANA7+10044308..10044694hypothetical protein
LOC_Os07g17080OsAffx.22385.1.S1_x_at2/117+10045234..10046448retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g17080OsAffx.20329.1.S1_at1/117+10045234..10046448retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g17090NANA7+10046629..10049596retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g17100NANA7+10049948..10050940hypothetical protein
LOC_Os07g17109NANA7+10052589..10053678NA
LOC_Os07g17120Os.50387.1.S1_at11/117+10056081..10057376salt tolerance protein, putative, expressed
LOC_Os07g17130Os.54261.1.S1_at11/117+10062512..10066307Senescence-associated, putative, expressed
LOC_Os07g17140Os.47463.1.S1_x_at6/117+10068211..10073079transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17140Os.14491.2.S1_x_at5/117+10068211..10073079transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17150NANA7+10074553..10078366transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17160OsAffx.16305.1.S1_at10/117+10088952..10091708hypothetical protein
LOC_Os07g17160OsAffx.28486.1.S1_at1/117+10088952..10091708hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54261.1.S1_at--700--10451Chr07:10065005..10065029 (25 bp)
TTAGCAGCCAGATGCATTTTTCTGT
LOC_Os07g17130
Os.54261.1.S1_at--245--10571Chr07:10066066..10066090 (25 bp)
TTCTTCTGGCTGTAGGCGTTTTTAG
LOC_Os07g17130
Os.54261.1.S1_at--1131--10331Chr07:10066086..10066110 (25 bp)
TTTAGCTAGGCTTATTGATTCTTCT
LOC_Os07g17130
Os.54261.1.S1_at--468--10791Chr07:10066100..10066124 (25 bp)
TTGATTCTTCTAAGTGCTTGCCATT
LOC_Os07g17130
Os.54261.1.S1_at--845--7311Chr07:10066113..10066137 (25 bp)
GTGCTTGCCATTGTAGCTAGGTCCA
LOC_Os07g17130
Os.54261.1.S1_at--504--8751Chr07:10066124..10066148 (25 bp)
TGTAGCTAGGTCCACTGCTATCAGT
LOC_Os07g17130
Os.54261.1.S1_at--302--1971Chr07:10066137..10066161 (25 bp)
ACTGCTATCAGTCAAGTTCCAGATG
LOC_Os07g17130
Os.54261.1.S1_at--987--10651Chr07:10066200..10066224 (25 bp)
TTCCTATGATACATACACCGCATTG
LOC_Os07g17130
Os.54261.1.S1_at--1138--2151Chr07:10066214..10066238 (25 bp)
ACACCGCATTGTTCGAAGTTTATCA
LOC_Os07g17130
Os.54261.1.S1_at--329--7731Chr07:10066251..10066275 (25 bp)
GGTGGTATGCAACTATAGAAGCTGT
LOC_Os07g17130
Os.54261.1.S1_at--831--6771Chr07:10066281..10066305 (25 bp)
GTTACTGTATCATGGATCATCGAAT
LOC_Os07g17130
Target Sequence 
TTAGCAGCCAGATGCATTTTTCTGTTGGGGCAGGTTTAAGTGCTGCAGCAGGGCCTGTTGGTAGAGTGCTAGAGGCTGAC
TTGAGAGCTGGTGATAAAGGCTCAGGTGTTTGTTATACATATAGCTGCAGCAAAGGTGCATTCATTGGTGTTTCGTTGGA
AGGGAACTTCGTTGCAACCCGAAGGGACGCAAATCTGCGGTTTTACGGCGACCCGTATCTGACAACCAGCGATATTCTCA
TGGGGGATATGCAGAGACCAAATGCTGCCAAGTTTCTGTACACAGCGTTGGATGGCCTGTACTCTGGGCTGAGTCGTTAG
GACGATGTAAATCTCAACTGTACATATTTGCTCTGATTCTTCTGGCTGTAGGCGTTTTTAGCTAGGCTTATTGATTCTTC
TAAGTGCTTGCCATTGTAGCTAGGTCCACTGCTATCAGTCAAGTTCCAGATGGCAAGTCAAAACCTCTATAGTTTACATG
TAAATATATCTTCCTATGATACATACACCGCATTGTTCGAAGTTTATCATCGGATATTTGTGGTGGTATGCAACTATAGA
AGCTGTTACATGTTACTGTATCATGGATCATCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54261.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis