Browse Element(s) Details


OsAffx.5351.1.S1_at

Description tigr:9635.m01715
TID=OsAffx.5351.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1706011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17010Os.56176.1.S1_at11/117+10017031..10019038Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os07g17020OsAffx.16303.1.S1_at11/117+10020751..10021180hypothetical protein
LOC_Os07g17030OsAffx.19542.3.S1_x_at6/117+10022721..10026943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g17040OsAffx.16304.1.S1_at9/117+10029164..10033007Mak16 protein
LOC_Os07g17050NANA7+10034579..10037341hypothetical protein
LOC_Os07g17060OsAffx.5351.1.S1_at11/117+10039054..10039675hypothetical protein
LOC_Os07g17060Os.52249.2.S1_x_at1/117+10039054..10039675hypothetical protein
LOC_Os07g17070NANA7+10044308..10044694hypothetical protein
LOC_Os07g17080OsAffx.22385.1.S1_x_at2/117+10045234..10046448retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g17080OsAffx.20329.1.S1_at1/117+10045234..10046448retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g17090NANA7+10046629..10049596retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g17100NANA7+10049948..10050940hypothetical protein
LOC_Os07g17109NANA7+10052589..10053678NA
LOC_Os07g17120Os.50387.1.S1_at11/117+10056081..10057376salt tolerance protein, putative, expressed
LOC_Os07g17130Os.54261.1.S1_at11/117+10062512..10066307Senescence-associated, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5351.1.S1_at--890--7711Chr07:10039114..10039138 (25 bp)
GGTGGCACTGCCGTCGGTTGGAGGT
LOC_Os07g17060
OsAffx.5351.1.S1_at--533--2511Chr07:10039561..10039585 (25 bp)
AACTTCTGGGCGCAACATGGAGTCA
LOC_Os07g17060
OsAffx.5351.1.S1_at--330--10591Chr07:10039564..10039588 (25 bp)
TTCTGGGCGCAACATGGAGTCAGCT
LOC_Os07g17060
OsAffx.5351.1.S1_at--440--8651Chr07:10039567..10039591 (25 bp)
TGGGCGCAACATGGAGTCAGCTGAC
LOC_Os07g17060
OsAffx.5351.1.S1_at--517--8391Chr07:10039569..10039593 (25 bp)
GGCGCAACATGGAGTCAGCTGACAA
LOC_Os07g17060
OsAffx.5351.1.S1_at--151--7111Chr07:10039582..10039606 (25 bp)
GTCAGCTGACAAGTATGCCAGCCAT
LOC_Os07g17060
OsAffx.5351.1.S1_at--262--5611Chr07:10039589..10039613 (25 bp)
GACAAGTATGCCAGCCATAGAAGGA
LOC_Os07g17060
OsAffx.5351.1.S1_at--257--10131Chr07:10039595..10039619 (25 bp)
TATGCCAGCCATAGAAGGAAGCGTA
LOC_Os07g17060
OsAffx.5351.1.S1_at--1022--4351Chr07:10039599..10039623 (25 bp)
CCAGCCATAGAAGGAAGCGTAGGAT
LOC_Os07g17060
OsAffx.5351.1.S1_at--293--1471Chr07:10039607..10039631 (25 bp)
AGAAGGAAGCGTAGGATCCTTGACG
LOC_Os07g17060
OsAffx.5351.1.S1_at--863--991Chr07:10039619..10039643 (25 bp)
AGGATCCTTGACGCGCTGCGTGTCC
LOC_Os07g17060
Target Sequence 
GGTGGCACTGCCGTCGGTTGGAGGTGGAAGAAGGGGCTGACAGGGAAAAGAACTTCTGGGCGCAACATGGAGTCAGCTGA
CAAGTATGCCAGCCATAGAAGGAAGCGTAGGATCCTTGACGCGCTGCGTGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5351.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis