Browse Element(s) Details


OsAffx.16303.1.S1_at

Description tigr:9635.m01710
TID=OsAffx.16303.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1702011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g16990NANA7+9993882..9998216retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g17000OsAffx.16302.1.S1_at11/117+9999551..10000132hypothetical protein
LOC_Os07g17010Os.56176.1.S1_at11/117+10017031..10019038Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os07g17020OsAffx.16303.1.S1_at11/117+10020751..10021180hypothetical protein
LOC_Os07g17030OsAffx.19542.3.S1_x_at6/117+10022721..10026943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g17040OsAffx.16304.1.S1_at9/117+10029164..10033007Mak16 protein
LOC_Os07g17050NANA7+10034579..10037341hypothetical protein
LOC_Os07g17060OsAffx.5351.1.S1_at11/117+10039054..10039675hypothetical protein
LOC_Os07g17060Os.52249.2.S1_x_at1/117+10039054..10039675hypothetical protein
LOC_Os07g17070NANA7+10044308..10044694hypothetical protein
LOC_Os07g17080OsAffx.22385.1.S1_x_at2/117+10045234..10046448retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g17080OsAffx.20329.1.S1_at1/117+10045234..10046448retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16303.1.S1_at--344--2451Chr07:10021100..10021124 (25 bp)
AACAACAAACCCAGCGGAGAGGAGG
LOC_Os07g17020
OsAffx.16303.1.S1_at--495--9391Chr07:10020899..10020923 (25 bp)
TCGATTGTCGGCTTGACTACCTGAG
LOC_Os07g17020
OsAffx.16303.1.S1_at--245--7191Chr07:10020893..10020917 (25 bp)
GTCGGCTTGACTACCTGAGGAGTGT
LOC_Os07g17020
OsAffx.16303.1.S1_at--458--3671Chr07:10020883..10020907 (25 bp)
CTACCTGAGGAGTGTTGGTTTTCTA
LOC_Os07g17020
OsAffx.16303.1.S1_at--987--6531Chr07:10020855..10020879 (25 bp)
GATTACCCGGTTGAAGCATTAGCTT
LOC_Os07g17020
OsAffx.16303.1.S1_at--182--151Chr07:10020838..10020862 (25 bp)
ATTAGCTTGCTTTAGATGGTATACG
LOC_Os07g17020
OsAffx.16303.1.S1_at--837--3611Chr07:10020829..10020853 (25 bp)
CTTTAGATGGTATACGGGCGGCAAT
LOC_Os07g17020
OsAffx.16303.1.S1_at--37--4671Chr07:10020812..10020836 (25 bp)
GCGGCAATGGAATGGGTTCACATGC
LOC_Os07g17020
OsAffx.16303.1.S1_at--828--6751Chr07:10020797..10020821 (25 bp)
GTTCACATGCCCATTATAGCGGATA
LOC_Os07g17020
OsAffx.16303.1.S1_at--106--611Chr07:10020791..10020815 (25 bp)
ATGCCCATTATAGCGGATACCAGAT
LOC_Os07g17020
OsAffx.16303.1.S1_at--223--9911Chr07:10020781..10020805 (25 bp)
TAGCGGATACCAGATTACCGGTAAT
LOC_Os07g17020
Target Sequence 
AACAACAAACCCAGCGGAGAGGAGGAGGGACGGCGTTTGTGGCAGAGATGAGGGGCGGTGGTGGCAACGTCGGCTCGATT
GTCGGCTTGACTACCTGAGGAGTGTTGGTTTTCTAAAAGATTACCCGGTTGAAGCATTAGCTTGCTTTAGATGGTATACG
GGCGGCAATGGAATGGGTTCACATGCCCATTATAGCGGATACCAGATTACCGGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16303.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis