Browse Element(s) Details


OsAffx.16302.1.S1_at

Description tigr:9635.m01708
TID=OsAffx.16302.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1700011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g16960Os.14735.1.S1_at11/117+9974830..9978271Phosphatidylinositol N-acetylglucosaminyltransferase subunit A, putative, expressed
LOC_Os07g16960OsAffx.16301.1.S1_at11/117+9974830..9978271Phosphatidylinositol N-acetylglucosaminyltransferase subunit A, putative, expressed
LOC_Os07g16970Os.26856.1.S1_at11/117+9981003..9986857Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os07g16970OsAffx.26546.1.S1_at1/117+9981003..9986857Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os07g16980OsAffx.28483.1.S1_at10/117+9988378..9990186hypothetical protein
LOC_Os07g16990NANA7+9993882..9998216retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g17000OsAffx.16302.1.S1_at11/117+9999551..10000132hypothetical protein
LOC_Os07g17010Os.56176.1.S1_at11/117+10017031..10019038Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os07g17020OsAffx.16303.1.S1_at11/117+10020751..10021180hypothetical protein
LOC_Os07g17030OsAffx.19542.3.S1_x_at6/117+10022721..10026943retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16302.1.S1_at--992--8491Chr07:9999603..9999627 (25 bp)
TGGCAGCCAAGGAGGAACATGCAAC
LOC_Os07g17000
OsAffx.16302.1.S1_at--159--6171Chr07:9999614..9999638 (25 bp)
GAGGAACATGCAACCGCAAACGGGA
LOC_Os07g17000
OsAffx.16302.1.S1_at--1019--3511Chr07:9999620..9999644 (25 bp)
CATGCAACCGCAAACGGGAGTGGCG
LOC_Os07g17000
OsAffx.16302.1.S1_at--1125--4691Chr07:9999684..9999708 (25 bp)
GCAGAGGGTTGGAGGCACGGGAGCC
LOC_Os07g17000
OsAffx.16302.1.S1_at--1156--4051Chr07:9999711..9999735 (25 bp)
CGAGGGCGCGGATCCAACGAGCTTC
LOC_Os07g17000
OsAffx.16302.1.S1_at--861--4071Chr07:9999728..9999752 (25 bp)
CGAGCTTCGGGCAGGGAGGCAGAGA
LOC_Os07g17000
OsAffx.16302.1.S1_at--532--7591Chr07:9999784..9999808 (25 bp)
GGGAAGGAACCGACAACGTCTGACG
LOC_Os07g17000
OsAffx.16302.1.S1_at--478--8171Chr07:9999789..9999813 (25 bp)
GGAACCGACAACGTCTGACGGCGAA
LOC_Os07g17000
OsAffx.16302.1.S1_at--946--1891Chr07:9999799..9999823 (25 bp)
ACGTCTGACGGCGAACGAGCATGGC
LOC_Os07g17000
OsAffx.16302.1.S1_at--67--4151Chr07:9999850..9999874 (25 bp)
CGCGGTGGAGACAGGGAGGCAGCTA
LOC_Os07g17000
OsAffx.16302.1.S1_at--71--1631Chr07:10000004..10000028 (25 bp)
AGCGAGAGAGGAACGGTCGGCCAGA
LOC_Os07g17000
Target Sequence 
TGGCAGCCAAGGAGGAACATGCAACCGCAAACGGGAGTGGCGGCGAGGCCGGGCGGTACTCCGGCGAGGAGCAATGGCCT
GGCAGAGGGTTGGAGGCACGGGAGCCGGCGAGGGCGCGGATCCAACGAGCTTCGGGCAGGGAGGCAGAGAGGCCGGCGAG
GAGGTTGACGTCGCGGTGCCGGGGAAGGAACCGACAACGTCTGACGGCGAACGAGCATGGCGGCAGGGGTTGCCGGAGCT
CGGGTGGCGCGGTGGAGACAGGGAGGCAGCTAGGAATTTGGGAGGTGGCAAAATGGAGCGAGGGGAGGGAGGAGGCTCCG
TTTTATAGGTCGGGGAGGGAGAGCCGGCCACAGGAAGGGGCGGATTGGCGGCGGCTTCAATGGAGGAGGAAGGAAGGAAG
GAGCGAGAGAGGAACGGTCGGCCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16302.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis