Browse Element(s) Details


OsAffx.28483.1.S1_at

Description tigr:9635.m01706
TID=OsAffx.28483.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1698010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g16930OsAffx.28482.1.S1_at11/117+9961590..9963884expressed protein
LOC_Os07g16939OsAffx.5904.1.S1_at2/117+9968628..9969134NA
LOC_Os07g16950Os.12874.1.S1_at11/117+9970672..9974492MAK16-like protein RBM13 A, putative, expressed
LOC_Os07g16960Os.14735.1.S1_at11/117+9974830..9978271Phosphatidylinositol N-acetylglucosaminyltransferase subunit A, putative, expressed
LOC_Os07g16960OsAffx.16301.1.S1_at11/117+9974830..9978271Phosphatidylinositol N-acetylglucosaminyltransferase subunit A, putative, expressed
LOC_Os07g16970Os.26856.1.S1_at11/117+9981003..9986857Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os07g16970OsAffx.26546.1.S1_at1/117+9981003..9986857Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os07g16980OsAffx.28483.1.S1_at10/117+9988378..9990186hypothetical protein
LOC_Os07g16990NANA7+9993882..9998216retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g17000OsAffx.16302.1.S1_at11/117+9999551..10000132hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28483.1.S1_at--622--9411Chr07:9988552..9988576 (25 bp)
TCGTCCGCTGGCTATGCCGCCAAGA
LOC_Os07g16980
OsAffx.28483.1.S1_at--364--5391Chr07:9988620..9988644 (25 bp)
GAAGCAGCAGGACATCGTCACCAAT
LOC_Os07g16980
OsAffx.28483.1.S1_at--127--3491Chr07:9988627..9988651 (25 bp)
CAGGACATCGTCACCAATGGAGGCG
LOC_Os07g16980
OsAffx.28483.1.S1_at--383--9412Chr07:9988674..9988698 (25 bp)
TCGTCGTCGACTCTTGCTCTGGAAG
LOC_Os07g16980
OsAffx.28483.1.S1_at--1161--4791Chr07:9988689..9988713 (25 bp)
GCTCTGGAAGAGCTCTCCTTGGCCG
LOC_Os07g16980
OsAffx.28483.1.S1_at--41--7551Chr07:9989419..9989443 (25 bp)
GTGGCTGCGTGCATCGACAGACAAC
LOC_Os07g16980
OsAffx.28483.1.S1_at--507--5691Chr07:9989490..9989514 (25 bp)
GACTGCAAAGCAGGGCACTAGGGCA
LOC_Os07g16980
OsAffx.28483.1.S1_at--780--10071Chr07:9989508..9989532 (25 bp)
TAGGGCAGCCGAGCAATGCACAGCA
LOC_Os07g16980
OsAffx.28483.1.S1_at--6--5131Chr07:9989525..9989549 (25 bp)
GCACAGCAGCACAGCCAAATTGAAA
LOC_Os07g16980
OsAffx.28483.1.S1_at--1139--5291NONE
GAAGGCTATGAACTATCGATGATAT
NONE
OsAffx.28483.1.S1_at--81--7211Chr07:9990123..9990147 (25 bp)
GTCGAGGATGTATATCTTTCTTTAT
LOC_Os07g16980
Target Sequence 
TCGTCCGCTGGCTATGCCGCCAAGACTCCCCGCAGCGGCCCGACGGCGTGGGCGCTGGAGGCGGCGATGAAGCAGCAGGA
CATCGTCACCAATGGAGGCGGCGATGGAGCACGCGCATGGTGTCGTCGTCGACTCTTGCTCTGGAAGAGCTCTCCTTGGC
CGGAGTTCGGAGTGGCTGCGTGGCTGCGTGCATCGACAGACAACAGGGAGACAGGGAGCAGCGGAGGCTCGCAGCAGGCA
GTAGCAGCTGGACTGCAAAGCAGGGCACTAGGGCAGCCGAGCAATGCACAGCAGCACAGCCAAATTGAAATTGATGAAGG
CTATGAACTATCGATGATATTGACATTGACAACTTTAATGTCGAGGATGTATATCTTTCTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28483.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis