Browse Element(s) Details


OsAffx.16301.1.S1_at

Description tigr:9635.m01704
TID=OsAffx.16301.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=glycosyl transferase, group 1 family protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1696011/11Phosphatidylinositol N-acetylglucosaminyltransferase subunit A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g16920OsAffx.10645.1.S1_at3/117+9954307..9954624hypothetical protein
LOC_Os07g16930OsAffx.28482.1.S1_at11/117+9961590..9963884expressed protein
LOC_Os07g16939OsAffx.5904.1.S1_at2/117+9968628..9969134NA
LOC_Os07g16950Os.12874.1.S1_at11/117+9970672..9974492MAK16-like protein RBM13 A, putative, expressed
LOC_Os07g16960Os.14735.1.S1_at11/117+9974830..9978271Phosphatidylinositol N-acetylglucosaminyltransferase subunit A, putative, expressed
LOC_Os07g16960OsAffx.16301.1.S1_at11/117+9974830..9978271Phosphatidylinositol N-acetylglucosaminyltransferase subunit A, putative, expressed
LOC_Os07g16970Os.26856.1.S1_at11/117+9981003..9986857Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os07g16970OsAffx.26546.1.S1_at1/117+9981003..9986857Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os07g16980OsAffx.28483.1.S1_at10/117+9988378..9990186hypothetical protein
LOC_Os07g16990NANA7+9993882..9998216retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g17000OsAffx.16302.1.S1_at11/117+9999551..10000132hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006506biological_processGPI anchor biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16301.1.S1_at--940--1451Chr07:9977118..9977142 (25 bp)
AGAAGTATGCCGTCTTTTTCCTAAG
LOC_Os07g16960
OsAffx.16301.1.S1_at--783--7391Chr07:9976840..9976864 (25 bp)
GTGATGGTCCAAAACGTGTGCGAAT
LOC_Os07g16960
OsAffx.16301.1.S1_at--1089--6271Chr07:9976773..9976797 (25 bp)
GATGTTAGGAGCTGTGCCTCATGCT
LOC_Os07g16960
OsAffx.16301.1.S1_at--33--9631Chr07:9976755..9976779 (25 bp)
TCATGCTCAAGTGCGATCTGTTCTG
LOC_Os07g16960
OsAffx.16301.1.S1_at--950--5471Chr07:9976046..9976066 (21 bp)
GAACAGTTCGCTTACAGAGGCCTTT
LOC_Os07g16960
OsAffx.16301.1.S1_at--874--6991Chr07:9975975..9975999 (25 bp)
GTACTAGAGTCGGTGGTGTTCCAGA
LOC_Os07g16960
OsAffx.16301.1.S1_at--371--7011Chr07:9975827..9975851 (25 bp)
GTACTTGCAGAACCAGCTCCTGAAG
LOC_Os07g16960
OsAffx.16301.1.S1_at--49--2951Chr07:9975782..9975806 (25 bp)
AAGGCTATCGATATGCTTCCTGGCA
LOC_Os07g16960
OsAffx.16301.1.S1_at--731--6371Chr07:9975756..9975779 (24 bp)
GATCCCCAAGTTATGCATCTTCGAA
LOC_Os07g16960
OsAffx.16301.1.S1_at--473--2611Chr07:9975235..9975496 (25 bp)
AACGCCTTCCACGATCTGGAGGAAA
LOC_Os07g16960
OsAffx.16301.1.S1_at--603--391Chr07:9975211..9975235 (25 bp)
ATCTAACTAGTTCTTTTCCCCTCAG
LOC_Os07g16960
Target Sequence 
AGAAGTATGCCGTCTTTTTCCTAAGGTTCGCTTTATTGTTGGAGGTGATGGTCCAAAACGTGTGCGAATTGAAGAAATGA
GGGAGAAGTTTTCCCTTCAGGATAGAGTTGAGATGTTAGGAGCTGTGCCTCATGCTCAAGTGCGATCTGTTCTGATATCT
GGTCATATTTTTTTGAACAGTTCGCTTACAGAGGCCTTTTGTATAGCCATTTTGGAAGCAGCAAGTTGTGGATTGTTGAC
AGTAAGTACTAGAGTCGGTGGTGTTCCAGAGGTTTTACCAGATGATATGGTAGTACTTGCAGAACCAGCTCCTGAAGATA
TGGTACGAGCTGTCAGGAAGGCTATCGATATGCTTCCTGGCATAGATCCCCAAGTTATGCATCTTCGAATGAAAAAGCTT
TATAGTTGGGACGATGTGGCGAAAAGAACAGAGATTGTGTATGATCGTGCAATGCAGTCACCACAAACAGATTTGCTAGA
ACGCCTTCCACGATCTGGAGGAAATCTAACTAGTTCTTTTCCCCTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16301.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis