Browse Element(s) Details


OsAffx.28482.1.S1_at

Description tigr:9635.m01701
TID=OsAffx.28482.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1693011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g16900Os.10827.1.S1_x_at9/117+9932112..9937024transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g16900Os.46055.2.S1_x_at5/117+9932112..9937024transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g16910NANA7+9942329..9948977retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16920OsAffx.10645.1.S1_at3/117+9954307..9954624hypothetical protein
LOC_Os07g16930OsAffx.28482.1.S1_at11/117+9961590..9963884expressed protein
LOC_Os07g16939OsAffx.5904.1.S1_at2/117+9968628..9969134NA
LOC_Os07g16950Os.12874.1.S1_at11/117+9970672..9974492MAK16-like protein RBM13 A, putative, expressed
LOC_Os07g16960Os.14735.1.S1_at11/117+9974830..9978271Phosphatidylinositol N-acetylglucosaminyltransferase subunit A, putative, expressed
LOC_Os07g16960OsAffx.16301.1.S1_at11/117+9974830..9978271Phosphatidylinositol N-acetylglucosaminyltransferase subunit A, putative, expressed
LOC_Os07g16970Os.26856.1.S1_at11/117+9981003..9986857Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os07g16970OsAffx.26546.1.S1_at1/117+9981003..9986857Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os07g16980OsAffx.28483.1.S1_at10/117+9988378..9990186hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28482.1.S1_at--918--6351Chr07:9963293..9963317 (25 bp)
GATGCCAGGCACAAGGCGAAACCTA
LOC_Os07g16930
OsAffx.28482.1.S1_at--48--1751Chr07:9963313..9963337 (25 bp)
ACCTATTCACAGACGCCTACAACGA
LOC_Os07g16930
OsAffx.28482.1.S1_at--881--7611Chr07:9963439..9963463 (25 bp)
GGGAAGATAAGTCACCATCCAGTAA
LOC_Os07g16930
OsAffx.28482.1.S1_at--1068--9871Chr07:9963597..9963621 (25 bp)
TACTTGCATGCTAAGGGCCTCGGTA
LOC_Os07g16930
OsAffx.28482.1.S1_at--44--6711Chr07:9963632..9963656 (25 bp)
GTTCCTGAGCTATGTTTGGCTACTC
LOC_Os07g16930
OsAffx.28482.1.S1_at--309--6871Chr07:9963645..9963669 (25 bp)
GTTTGGCTACTCTTGCATTACATGG
LOC_Os07g16930
OsAffx.28482.1.S1_at--298--1451Chr07:9963688..9963712 (25 bp)
AGAAGCTGGCAAGAGGAGACCTCCA
LOC_Os07g16930
OsAffx.28482.1.S1_at--1031--8131Chr07:9963720..9963744 (25 bp)
GGACACTCAGGTAATTTGCGGACAT
LOC_Os07g16930
OsAffx.28482.1.S1_at--831--2071Chr07:9963741..9963765 (25 bp)
ACATTCCATGTTAGAGAGTCCTCTG
LOC_Os07g16930
OsAffx.28482.1.S1_at--798--8531Chr07:9963782..9963806 (25 bp)
TGGACCATCGACTTCTTATGCTAAC
LOC_Os07g16930
OsAffx.28482.1.S1_at--918--8811Chr07:9963827..9963851 (25 bp)
TGTTGTTGCTCCATTCTCTGAGGAT
LOC_Os07g16930
Target Sequence 
GATGCCAGGCACAAGGCGAAACCTATTCACAGACGCCTACAACGAACTGAAGGGTGTCGTCAAGGAAAAGAATCCACCAC
TGGATGAAAGAGAACTTGCAGAGAGAATAATCGCCGAGGTGCAGCAACAACTCGAGGAGATAACTGGGGAAGATAAGTCA
CCATCCAGTAAAAGAGGGCTCATTGAAGATGCTTGGTCCATTGCTGAAGAGCTCCTGAAGTTAGAAGATGACGAGAAGAT
GTGGAGAGTGATTGAAGGCGTATGGGTGGAGATGCTTTGCTTTTCTGCTGCCAGATGCCGAGGGTACTTGCATGCTAAGG
GCCTCGGTACAGGCGTGGAGTTCCTGAGCTATGTTTGGCTACTCTTGCATTACATGGGGATGGAGACCTTGGCAGAGAAG
CTGGCAAGAGGAGACCTCCAAAACAGAGGACACTCAGGTAATTTGCGGACATTCCATGTTAGAGAGTCCTCTGGTGAAGA
GCAGGTTGCTGGACCATCGACTTCTTATGCTAACGGAGACAACGGTGATCAACATGTTGTTGCTCCATTCTCTGAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28482.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis