Browse Element(s) Details


Os.14735.1.S1_at

Description gb:BI807047
DB_XREF= gi:15854251
DB_XREF=S081H01
CLONE=S081H01
TID=Os.14735.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.14735 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T47450 (A.thaliana) T47450 n-acetylglucosaminyl-phosphatidylinositol-like protein - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1696011/11Phosphatidylinositol N-acetylglucosaminyltransferase subunit A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g16920OsAffx.10645.1.S1_at3/117+9954307..9954624hypothetical protein
LOC_Os07g16930OsAffx.28482.1.S1_at11/117+9961590..9963884expressed protein
LOC_Os07g16939OsAffx.5904.1.S1_at2/117+9968628..9969134NA
LOC_Os07g16950Os.12874.1.S1_at11/117+9970672..9974492MAK16-like protein RBM13 A, putative, expressed
LOC_Os07g16960Os.14735.1.S1_at11/117+9974830..9978271Phosphatidylinositol N-acetylglucosaminyltransferase subunit A, putative, expressed
LOC_Os07g16960OsAffx.16301.1.S1_at11/117+9974830..9978271Phosphatidylinositol N-acetylglucosaminyltransferase subunit A, putative, expressed
LOC_Os07g16970Os.26856.1.S1_at11/117+9981003..9986857Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os07g16970OsAffx.26546.1.S1_at1/117+9981003..9986857Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os07g16980OsAffx.28483.1.S1_at10/117+9988378..9990186hypothetical protein
LOC_Os07g16990NANA7+9993882..9998216retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g17000OsAffx.16302.1.S1_at11/117+9999551..10000132hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006506biological_processGPI anchor biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14735.1.S1_at--812--3331Chr07:9975353..9975374 (22 bp)
CACGATACCTCAGATGTGGAGCTTG
LOC_Os07g16960
Os.14735.1.S1_at--162--4931Chr07:9975333..9975357 (25 bp)
GCTTGGGCAGGCAAACTGTTTTGTC
LOC_Os07g16960
Os.14735.1.S1_at--792--711Chr07:9975303..9975327 (25 bp)
ATGATCATCAACTACCTACTATGGT
LOC_Os07g16960
Os.14735.1.S1_at--681--3691Chr07:9975285..9975309 (25 bp)
CTATGGTGCCTCCTAGAATATCTGC
LOC_Os07g16960
Os.14735.1.S1_at--728--1471Chr07:9975199..9975295 (25 bp)
AGAATATCTGCAGCCCACTGAAGGT
LOC_Os07g16960
Os.14735.1.S1_at--996--10411Chr07:9975078..9975102 (25 bp)
TTATCGAATCATTGACCAGCACCCT
LOC_Os07g16960
Os.14735.1.S1_at--730--3351Chr07:9975059..9975083 (25 bp)
CACCCTTTCCTGGTCTGTAGAATTT
LOC_Os07g16960
Os.14735.1.S1_at--654--9231Chr07:9975030..9975054 (25 bp)
TCTCTTTTTAATTTTACTTGCCCTG
LOC_Os07g16960
Os.14735.1.S1_at--681--5411Chr07:9975006..9975030 (25 bp)
GAAGCCCAGGAAACATTTTCGACAG
LOC_Os07g16960
Os.14735.1.S1_at--607--1171Chr07:9974983..9975007 (25 bp)
AGTAGAGTACCCATGACCTAGTCAC
LOC_Os07g16960
Os.14735.1.S1_at--756--9231Chr07:9974863..9974887 (25 bp)
TCCATGCTCTTGAAAACTATGCTGT
LOC_Os07g16960
Target Sequence 
CACGATACCTCAGATGTGGAGCTTGGGCAGGCAAACTGTTTTGTCTTGTTATGATCATCAACTACCTACTATGGTGCCTC
CTAGAATATCTGCAGCCCACTGAAGGTATTGAAGAGGTCCCAGATATCAGGCCAGTACATGCTCGTTTAGAATCAGTAGA
TGATACATGTGAAACTCAAGGAAAAGGAATTAGAATTTGCCATTATCGAATCATTGACCAGCACCCTTTCCTGGTCTGTA
GAATTTACCTTCTCTTTTTAATTTTACTTGCCCTGAAGCCCAGGAAACATTTTCGACAGTAGAGTACCCATGACCTAGTC
ACCCCACANTTTGGGGAAATCCTTTGACATGCTTTTGAAAGCTATGTTGTTTGTAAATATCANGTGGTAACACCNCTATT
NTTGTTATGTAAGTGGATGATCCATGCTCTTGAAAACTATGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14735.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis