Browse Element(s) Details


Os.12874.1.S1_at

Description gb:AK058966.1
DB_XREF= gi:32968984
TID=Os.12874.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12874 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013169N21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-C08, full insert sequence.
FL= gb:AK058966.1 gb:AK068904.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1695011/11MAK16-like protein RBM13 A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g16910NANA7+9942329..9948977retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16920OsAffx.10645.1.S1_at3/117+9954307..9954624hypothetical protein
LOC_Os07g16930OsAffx.28482.1.S1_at11/117+9961590..9963884expressed protein
LOC_Os07g16939OsAffx.5904.1.S1_at2/117+9968628..9969134NA
LOC_Os07g16950Os.12874.1.S1_at11/117+9970672..9974492MAK16-like protein RBM13 A, putative, expressed
LOC_Os07g16960Os.14735.1.S1_at11/117+9974830..9978271Phosphatidylinositol N-acetylglucosaminyltransferase subunit A, putative, expressed
LOC_Os07g16960OsAffx.16301.1.S1_at11/117+9974830..9978271Phosphatidylinositol N-acetylglucosaminyltransferase subunit A, putative, expressed
LOC_Os07g16970Os.26856.1.S1_at11/117+9981003..9986857Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os07g16970OsAffx.26546.1.S1_at1/117+9981003..9986857Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os07g16980OsAffx.28483.1.S1_at10/117+9988378..9990186hypothetical protein
LOC_Os07g16990NANA7+9993882..9998216retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12874.1.S1_at--393--4291Chr07:9973701..9973725 (25 bp)
CCTAAAGGGCGAGGTTCTGATTTGA
LOC_Os07g16950
Os.12874.1.S1_at--938--4592Chr07:9974022..9974046 (25 bp)
GCGAGCACTGGCTTCAATTGCATAT
LOC_Os07g16950
Os.12874.1.S1_at--427--1251Chr07:9974085..9974109 (25 bp)
AGATTGGCTTAGACTTAGTTGCTGA
LOC_Os07g16950
Os.12874.1.S1_at--333--9871Chr07:9974220..9974244 (25 bp)
TACAGGAAGATGCTCACTCTGGCCT
LOC_Os07g16950
Os.12874.1.S1_at--1137--3311Chr07:9974234..9974258 (25 bp)
CACTCTGGCCTGAGGCAGTTGTTTA
LOC_Os07g16950
Os.12874.1.S1_at--425--10771Chr07:9974266..9974290 (25 bp)
TTGTATCAACTTATCCATCGACGGA
LOC_Os07g16950
Os.12874.1.S1_at--517--511Chr07:9974282..9974306 (25 bp)
ATCGACGGATAAGCCATCCAATTTG
LOC_Os07g16950
Os.12874.1.S1_at--219--6691Chr07:9974350..9974374 (25 bp)
GTTCCAACGTCACAAACAATCTGTT
LOC_Os07g16950
Os.12874.1.S1_at--850--3051Chr07:9974367..9974391 (25 bp)
AATCTGTTTGTAACCGCTACGTCCA
LOC_Os07g16950
Os.12874.1.S1_at--673--4111Chr07:9974381..9974405 (25 bp)
CGCTACGTCCACCAAAAGCAGTAAT
LOC_Os07g16950
Os.12874.1.S1_at--848--9591Chr07:9974457..9974481 (25 bp)
TCATTGGATGGTTTCCACTGGAATT
LOC_Os07g16950
Target Sequence 
CCTAAAGGGCGAGGTTCTGATTTGAGATCAAATATAGGGAAAAAATCCAAGAAGCTTATCACTGAGGTGGAACGAGATGA
TGACATGGGTATCAGACGAAGGACGCGAATGTGAGTTGTGCGAGCACTGGCTTCAATTGCATATGCCACGGGGTGCTGTG
CTGTCAGTTTTGGTTGTACCTGAGATTGGCTTAGACTTAGTTGCTGAGAAATCAAGATGAGTTGTGGCATAGAACATTAT
ATTTATATGTTGGCAAACTATTAGGTTTAGCGTTCAAATTGCAAGATAAGTGTAACATTATTTTGCAGCAAGCNCTTTAC
AGGAAGATGCTCACTCTGGCCTGAGGCAGTTGTTTAGGGTTGTTTGTATCAACTTATCCATCGACGGATAAGCCATCCAA
TTTGGCTNTTAGGCAAGCGGGTGTTTTGCGNTTACACAGATNTTAACAGTTCCAACGTCACAAACAATCTGTTTGTAACC
GCTACGTCCACCAAAAGCAGTAATTTTCTTAATGTTTTGCAGCAACATTTGATCAAACTCTNTGGTTTAAAATGNTCATT
GGATGGTTTCCACTGGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12874.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis