Browse Element(s) Details


Os.26856.1.S1_at

Description gb:AK069636.1
DB_XREF= gi:32979660
TID=Os.26856.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26856 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023025M21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023025M21, full insert sequence.
FL= gb:AK069636.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1697011/11Rab GDP dissociation inhibitor alpha, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g16930OsAffx.28482.1.S1_at11/117+9961590..9963884expressed protein
LOC_Os07g16939OsAffx.5904.1.S1_at2/117+9968628..9969134NA
LOC_Os07g16950Os.12874.1.S1_at11/117+9970672..9974492MAK16-like protein RBM13 A, putative, expressed
LOC_Os07g16960Os.14735.1.S1_at11/117+9974830..9978271Phosphatidylinositol N-acetylglucosaminyltransferase subunit A, putative, expressed
LOC_Os07g16960OsAffx.16301.1.S1_at11/117+9974830..9978271Phosphatidylinositol N-acetylglucosaminyltransferase subunit A, putative, expressed
LOC_Os07g16970Os.26856.1.S1_at11/117+9981003..9986857Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os07g16970OsAffx.26546.1.S1_at1/117+9981003..9986857Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os07g16980OsAffx.28483.1.S1_at10/117+9988378..9990186hypothetical protein
LOC_Os07g16990NANA7+9993882..9998216retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g17000OsAffx.16302.1.S1_at11/117+9999551..10000132hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015031biological_processprotein transport
GO:0048227biological_processplasma membrane to endosome transport
GO:0005093molecular_functionRab GDP-dissociation inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26856.1.S1_at--857--3011Chr07:9982123..9982147 (25 bp)
AATCCAGCGGCGGAATTGAAACCAG
LOC_Os07g16970
Os.26856.1.S1_at--1145--7931Chr07:9982098..9982122 (25 bp)
GGATAGACCTTCTTGGGCCAGTGGA
LOC_Os07g16970
Os.26856.1.S1_at--518--10271Chr07:9982045..9982069 (25 bp)
TTTGAACCTACTAATGACCCATCTT
LOC_Os07g16970
Os.26856.1.S1_at--885--5811Chr07:9982030..9982054 (25 bp)
GACCCATCTTCAGACAATTGTTTCA
LOC_Os07g16970
Os.26856.1.S1_at--81--4411Chr07:9981894..9981918 (25 bp)
GCCACAACACACTTTGAGTCTACTG
LOC_Os07g16970
Os.26856.1.S1_at--257--7991Chr07:9981865..9981889 (25 bp)
GGATGTTCTTTCCATCTATACAAAG
LOC_Os07g16970
Os.26856.1.S1_at--538--5751Chr07:9981361..9981385 (25 bp)
GACGGTTGATCTCAGTGTGGATTTA
LOC_Os07g16970
Os.26856.1.S1_at--707--9771Chr07:9981338..9981362 (25 bp)
TAAGTGCTGCGAGTGCTGCTGAAGA
LOC_Os07g16970
Os.26856.1.S1_at--361--31Chr07:9981298..9981322 (25 bp)
ATTGGACTGTCCTTTGGTGCACAGA
LOC_Os07g16970
Os.26856.1.S1_at--929--1011Chr07:9981156..9981180 (25 bp)
AGGTTCATAGCAATTTAGCCTGTGA
LOC_Os07g16970
Os.26856.1.S1_at--371--8511Chr07:9981066..9981090 (25 bp)
TGAACACCGAACTGGTACCTCCAAT
LOC_Os07g16970
Target Sequence 
AATCCAGCGGCGGAATTGAAACCAGGGATAGACCTTCTTGGGCCAGTGGATGAACTATTTATTGATACATACGACAGATT
TGAACCTACTAATGACCCATCTTCAGACAATTGTTTCATCTCAACAAGTTATGATGCCACAACACACTTTGAGTCTACTG
TGATGGATGTTCTTTCCATCTATACAAAGATCACCGGAAAGACGGTTGATCTCAGTGTGGATTTAAGTGCTGCGAGTGCT
GCTGAAGATGATCTCTAATAGTTATTGGACTGTCCTTTGGTGCACAGAGGAAAAGATTTGTGCGTTGTTTTTCCATTCAT
ATTAGGTTTATATATGATTTTTTTTCTTTTATTCCAAACTATAGTGGCTGAGTTTTATTAATAATTTGATAATGCTGTAT
ATTCTAGGTTCATAGCAATTTAGCCTGTGAGTAAACAGCTGTTTTTGTTGTTCAGTTTACTTAATTTCACCTTTAAATGT
TGTGGATAGTGCTAATGAACACCGAACTGGTACCTCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26856.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis