Browse Element(s) Details


Os.56176.1.S1_at

Description gb:AK109558.1
DB_XREF= gi:32994767
TID=Os.56176.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56176 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-E09, full insert sequence.
FL= gb:AK109558.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1701011/11Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g16990NANA7+9993882..9998216retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g17000OsAffx.16302.1.S1_at11/117+9999551..10000132hypothetical protein
LOC_Os07g17010Os.56176.1.S1_at11/117+10017031..10019038Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os07g17020OsAffx.16303.1.S1_at11/117+10020751..10021180hypothetical protein
LOC_Os07g17030OsAffx.19542.3.S1_x_at6/117+10022721..10026943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g17040OsAffx.16304.1.S1_at9/117+10029164..10033007Mak16 protein
LOC_Os07g17050NANA7+10034579..10037341hypothetical protein
LOC_Os07g17060OsAffx.5351.1.S1_at11/117+10039054..10039675hypothetical protein
LOC_Os07g17060Os.52249.2.S1_x_at1/117+10039054..10039675hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009715biological_processchalcone biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009926biological_processauxin polar transport
GO:0005634cellular_componentnucleus
GO:0005783cellular_componentendoplasmic reticulum
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0016210molecular_functionnaringenin-chalcone synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56176.1.S1_at--754--8311Chr07:10018482..10018506 (25 bp)
GGCTCGTCGACGATCATGGACCAGG
LOC_Os07g17010
Os.56176.1.S1_at--7--7471Chr07:10018555..10018579 (25 bp)
GTGTGCTCAGCGACTACGGGAACAT
LOC_Os07g17010
Os.56176.1.S1_at--765--2111Chr07:10018576..10018600 (25 bp)
ACATGTCTGGCGCTACGGTGATCTT
LOC_Os07g17010
Os.56176.1.S1_at--198--3731Chr07:10018588..10018612 (25 bp)
CTACGGTGATCTTCGCGCTGGACGA
LOC_Os07g17010
Os.56176.1.S1_at--1009--8851Chr07:10018700..10018724 (25 bp)
TGATGCGATGCTGTTGCACGCCACC
LOC_Os07g17010
Os.56176.1.S1_at--823--3351Chr07:10018716..10018740 (25 bp)
CACGCCACCTCTCATGTGAATTAAG
LOC_Os07g17010
Os.56176.1.S1_at--178--5211Chr07:10018816..10018840 (25 bp)
GAATTAAGCGTTTCTTCAGCTCGTT
LOC_Os07g17010
Os.56176.1.S1_at--1074--131Chr07:10018833..10018857 (25 bp)
AGCTCGTTTTCTGACCGAAGTCGGA
LOC_Os07g17010
Os.56176.1.S1_at--963--1771Chr07:10018846..10018870 (25 bp)
ACCGAAGTCGGATGTGCCACGACGT
LOC_Os07g17010
Os.56176.1.S1_at--44--7951Chr07:10018872..10018896 (25 bp)
GGATAGCGCGTTTGTTGCATCGTGC
LOC_Os07g17010
Os.56176.1.S1_at--100--4971Chr07:10018888..10018912 (25 bp)
GCATCGTGCGTTTTAATCGGTCATG
LOC_Os07g17010
Target Sequence 
GGCTCGTCGACGATCATGGACCAGGTCGACGCGGCGCTCGGCCTCGAGCCCGGCAAGCTGGCGGCGAGCCGCCGTGTGCT
CAGCGACTACGGGAACATGTCTGGCGCTACGGTGATCTTCGCGCTGGACGAGCTGCGCCGGCAGCGCAAGGAGGCGGCGG
CGGCGGGTGAATGGCCGGAGTTGGGAGTGATGATGGCGTTCGGCCCGGGGATGACCGTTGATGCGATGCTGTTGCACGCC
ACCTCTCATGTGAATTAAGTTAATTAATTTTGTTTCATGTAGTGGTTAATTGGATATAATCCGGGGTTACCGGAATTATA
TTCAGTGAAGCCAAGAATTAAGCGTTTCTTCAGCTCGTTTTCTGACCGAAGTCGGATGTGCCACGACGTGGGATAGCGCG
TTTGTTGCATCGTGCGTTTTAATCGGTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56176.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis