Browse Element(s) Details


OsAffx.16406.1.S1_at

Description tigr:9635.m02447
TID=OsAffx.16406.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2553011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25480OsAffx.5434.1.S1_at11/117+14592890..14593169hypothetical protein
LOC_Os07g25484NANA7+14598828..14599110hypothetical protein
LOC_Os07g25490OsAffx.5435.1.S1_at11/117+14600782..14603244hypothetical protein
LOC_Os07g25500OsAffx.16405.1.S1_at11/117+14604550..14606094pentatricopeptide, putative, expressed
LOC_Os07g25510OsAffx.28579.1.S1_at11/117+14607567..14608065hypothetical protein
LOC_Os07g25520NANA7+14608507..14608809hypothetical protein
LOC_Os07g25530OsAffx.16406.1.S1_at11/117+14612172..14612592hypothetical protein
LOC_Os07g25540OsAffx.5436.1.S1_at11/117+14617050..14618807expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16406.1.S1_at--240--4431Chr07:14612436..14612460 (25 bp)
GCCAGGATACTTACTTCTTGCTCAA
LOC_Os07g25530
OsAffx.16406.1.S1_at--269--2051Chr07:14612428..14612452 (25 bp)
ACTTACTTCTTGCTCAAGTGCGTAC
LOC_Os07g25530
OsAffx.16406.1.S1_at--295--2851Chr07:14612413..14612437 (25 bp)
AAGTGCGTACTTTTGGATCCAACAG
LOC_Os07g25530
OsAffx.16406.1.S1_at--464--2491Chr07:14612393..14612417 (25 bp)
AACAGTGGCGCGGTGGATCCCATCC
LOC_Os07g25530
OsAffx.16406.1.S1_at--454--9211Chr07:14612371..14612395 (25 bp)
TCCACGTGAGTTCTTCATGGGCAGA
LOC_Os07g25530
OsAffx.16406.1.S1_at--300--7591Chr07:14612304..14612368 (25 bp)
GGGCTCAATAGCACAAGGTCCACAT
LOC_Os07g25530
OsAffx.16406.1.S1_at--947--2871Chr07:14612290..14612313 (24 bp)
AAGGTCCACATCACAATTACTTCGT
LOC_Os07g25530
OsAffx.16406.1.S1_at--270--2231Chr07:14612278..14612302 (25 bp)
ACAATTACTTCGTGAGGGCAACCCA
LOC_Os07g25530
OsAffx.16406.1.S1_at--1000--1071Chr07:14612264..14612288 (25 bp)
AGGGCAACCCACAAGACGATCGAGA
LOC_Os07g25530
OsAffx.16406.1.S1_at--653--271Chr07:14612222..14612246 (25 bp)
ATATGGGTAATGAGCAATGCCTGTA
LOC_Os07g25530
OsAffx.16406.1.S1_at--41--3031Chr07:14612207..14612231 (25 bp)
AATGCCTGTAAGAATTGCCGTTTGA
LOC_Os07g25530
Target Sequence 
GCCAGGATACTTACTTCTTGCTCAAGTGCGTACTTTTGGATCCAACAGTGGCGCGGTGGATCCCATCCACGTGAGTTCTT
CATGGGCAGACGGGGCTCAATAGCACAAGGTCCACATCACAATTACTTCGTGAGGGCAACCCACAAGACGATCGAGAATA
AAAATGAGGTTACAATATGGGTAATGAGCAATGCCTGTAAGAATTGCCGTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16406.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis