Browse Element(s) Details


OsAffx.16500.1.S1_at

Description tigr:9635.m03028
TID=OsAffx.16500.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to F21B7.18
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3093011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30890Os.31312.2.S1_x_at1/117+18284504..18287733transposon protein, putative, unclassified
LOC_Os07g30900NANA7+18288132..18290047retrotransposon protein, putative, unclassified
LOC_Os07g30910NANA7+18293373..18299103retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g30920Os.56089.1.S1_at1/117+18302725..18303132transposon protein, putative, unclassified
LOC_Os07g30930OsAffx.16500.1.S1_at11/117+18307988..18309961pentatricopeptide, putative, expressed
LOC_Os07g30940Os.5232.1.A1_at11/117+18320091..18322980expressed protein
LOC_Os07g30950Os.54865.1.S1_at10/117+18327264..18329088Taxane 10-beta-hydroxylase, putative, expressed
LOC_Os07g30960OsAffx.5487.1.S1_at10/117+18330234..18332264CTF2A, putative, expressed
LOC_Os07g30970Os.146.1.S1_at11/117+18333178..18335793Nucleoside diphosphate kinase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16500.1.S1_at--99--6811Chr07:18309381..18309405 (25 bp)
GTTTTGTGCCTGATTCATACTGCTA
LOC_Os07g30930
OsAffx.16500.1.S1_at--166--6331Chr07:18309449..18309473 (25 bp)
GATGCATGTGCCTTGTATAAACGGA
LOC_Os07g30930
OsAffx.16500.1.S1_at--702--6891Chr07:18309502..18309526 (25 bp)
GTATACTTATACCATTCTCATTGAT
LOC_Os07g30930
OsAffx.16500.1.S1_at--175--911Chr07:18309555..18309579 (25 bp)
AGGCACTGAAGTTTTGGGACGCGAT
LOC_Os07g30930
OsAffx.16500.1.S1_at--568--2871Chr07:18309587..18309611 (25 bp)
AAGGGAATTACTCCCACAGCTGCAG
LOC_Os07g30930
OsAffx.16500.1.S1_at--220--3391Chr07:18309609..18309633 (25 bp)
CAGCTTTCAGGACCCTTGCCAGTGG
LOC_Os07g30930
OsAffx.16500.1.S1_at--451--7571Chr07:18309632..18309656 (25 bp)
GGGCTCTGTCTTTCTGGTAAATTCA
LOC_Os07g30930
OsAffx.16500.1.S1_at--342--9671Chr07:18309654..18309678 (25 bp)
TCAGCCGGGCATGCAGGATATTGGA
LOC_Os07g30930
OsAffx.16500.1.S1_at--642--7411Chr07:18309698..18309722 (25 bp)
GTGATTCCAGAGACGGCCCATGAGG
LOC_Os07g30930
OsAffx.16500.1.S1_at--552--2191Chr07:18309804..18309828 (25 bp)
AAATACCTGGGAGAGTTCGTACGAT
LOC_Os07g30930
OsAffx.16500.1.S1_at--256--6411Chr07:18309863..18309887 (25 bp)
GATCTGGCTGTCAAACTAGTGCACA
LOC_Os07g30930
Target Sequence 
GTTTTGTGCCTGATTCATACTGCTACAATGTGCTGATTGATGGATTAGCCAAATCAGGAAGAATGGATGATGCATGTGCC
TTGTATAAACGGATGGAAGATGATGGCTGTGATCAAACAGTGTATACTTATACCATTCTCATTGATGGTTTGTTCAAGGA
ACACAAGAATGAAGAGGCACTGAAGTTTTGGGACGCGATGATCGACAAGGGAATTACTCCCACAGCTGCAGCTTTCAGGA
CCCTTGCCAGTGGGCTCTGTCTTTCTGGTAAATTCAGCCGGGCATGCAGGATATTGGATGAACTTGCTCCAATGGGGGTG
ATTCCAGAGACGGCCCATGAGGATATGATCAATGTGCTGTGTAAGGCTGGCAGATTCAAGCAGGCCTGCAAATTAGCAGA
TGGCATTGTACAGAAAGGACGTGAAATACCTGGGAGAGTTCGTACGATGATGATCAATGCACTTCGAAAAGCAGGAAATA
CTGATCTGGCTGTCAAACTAGTGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16500.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis