Browse Element(s) Details


OsAffx.16519.1.S1_at

Description tigr:9635.m03159
TID=OsAffx.16519.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to squamosa-promoter binding protein 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3217011/11SBP domain containing protein, expressed
LOC_Os04g345703/11expressed protein
LOC_Os01g669303/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32110Os.45774.1.S1_at1/117+19073800..19076846transposon protein, putative, unclassified
LOC_Os07g32120NANA7+19081963..19082994Transcription factor TFIIB repeat family protein
LOC_Os07g32140OsAffx.16517.1.S1_at11/117+19089523..19090179hypothetical protein
LOC_Os07g32150Os.50411.1.S1_at1/117+19093612..19095269retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g32160OsAffx.16518.1.S1_at11/117+19096863..19097393hypothetical protein
LOC_Os07g32170Os.9500.1.S1_s_at11/117+19098270..19101600SBP domain containing protein, expressed
LOC_Os07g32170OsAffx.16519.1.S1_at11/117+19098270..19101600SBP domain containing protein, expressed
LOC_Os07g32180OsAffx.19542.3.S1_x_at6/117+19111599..19115821retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0009911biological_processpositive regulation of flower development
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16519.1.S1_at--509--9576Chr05:7244385..7244409 (25 bp)
TCTTCTGTCATGCAGCCATGCTAGT
NONE
OsAffx.16519.1.S1_at--217--10616Chr05:7244387..7244411 (25 bp)
TTCTGTCATGCAGCCATGCTAGTGT
NONE
OsAffx.16519.1.S1_at--17--7131Chr07:19098732..19098756 (25 bp)
GTCATGCAGCCATGCTAGTGTGAGT
LOC_Os07g32170
OsAffx.16519.1.S1_at--1136--9036Chr05:7244395..7244738 (25 bp)
TGCAGCCATGCTAGTGTGAGTGTGT
NONE
OsAffx.16519.1.S1_at--14--3391Chr07:19098726..19098750 (25 bp)
CAGCCATGCTAGTGTGAGTGTGTGT
LOC_Os07g32170
OsAffx.16519.1.S1_at--1017--1091Chr07:19098710..19098734 (25 bp)
AGTGTGTGTGTTCGTGCCACTACTA
LOC_Os07g32170
OsAffx.16519.1.S1_at--1037--8651Chr07:19098704..19098728 (25 bp)
TGTGTTCGTGCCACTACTACTACTA
LOC_Os07g32170
OsAffx.16519.1.S1_at--729--8711Chr07:19098677..19098701 (25 bp)
TGTCTACATCGATCTATCTACCTAT
LOC_Os07g32170
OsAffx.16519.1.S1_at--1007--9872Chr05:7244446..7244470 (23 bp)
TACATCGATCTATCTACCTATATAT
NONE
OsAffx.16519.1.S1_at--488--451Chr07:19098662..19098686 (25 bp)
ATCTACCTATATATATCCACCACCT
LOC_Os07g32170
OsAffx.16519.1.S1_at--922--1731Chr07:19098658..19098682 (25 bp)
ACCTATATATATCCACCACCTACGT
LOC_Os07g32170
Target Sequence 
TCTTCTGTCATGCAGCCATGCTAGTGTGAGTGTGTGTGTTCGTGCCACTACTACTACTACATGTCTACATCGATCTATCT
ACCTATATATATCCACCACCTACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16519.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis