Browse Element(s) Details


OsAffx.16975.1.S1_at

Description tigr:9636.m01317
TID=OsAffx.16975.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY087885 F-box protein ZEITLUPEFKFLKPADAGIO family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1336011/11F-box protein ZEITLUPE/FKF/LKP/ADAGIO family, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13330NANA8+7914634..7918188retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g13340NANA8+7919380..7923621retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g13350Os.48839.1.S1_at11/118+7933379..7938142ubiquitin carboxyl-terminal hydrolase family protein, putative, expressed
LOC_Os08g13360Os.27001.2.S1_at11/118+7940273..7945595F-box protein ZEITLUPE/FKF/LKP/ADAGIO family, putative, expressed
LOC_Os08g13360OsAffx.16975.1.S1_at11/118+7940273..7945595F-box protein ZEITLUPE/FKF/LKP/ADAGIO family, putative, expressed
LOC_Os08g13360Os.27001.3.A1_a_at11/118+7940273..7945595F-box protein ZEITLUPE/FKF/LKP/ADAGIO family, putative, expressed
LOC_Os08g13369NANA8+7947133..7949172NA
LOC_Os08g13380OsAffx.5802.1.S1_at11/118+7949938..7950678hypothetical protein
LOC_Os08g13390Os.55149.1.S1_at11/118+7957286..7962203expressed protein
LOC_Os08g13400NANA8+7966587..7966832hypothetical protein
LOC_Os08g13410NANA8+7970000..7972730retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007623biological_processcircadian rhythm
GO:0009911biological_processpositive regulation of flower development
GO:0042752biological_processregulation of circadian rhythm
GO:0005829cellular_componentcytosol
GO:0015030cellular_componentCajal body
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16975.1.S1_at--794--6671Chr08:7941906..7941930 (25 bp)
GTTCTGGCCACACTTTAACTTGGAT
LOC_Os08g13360
OsAffx.16975.1.S1_at--1068--1111Chr08:7941874..7941898 (25 bp)
AGTCGCATGGTTCTTTTTGGTGGTA
LOC_Os08g13360
OsAffx.16975.1.S1_at--481--6271Chr08:7941823..7941847 (25 bp)
GATGTCTGGCTGCTTGATATCAATG
LOC_Os08g13360
OsAffx.16975.1.S1_at--971--8951Chr08:7941746..7941770 (25 bp)
TGAAATGCCTTTTCCACGGGTTGGG
LOC_Os08g13360
OsAffx.16975.1.S1_at--133--8651Chr08:7941725..7941749 (25 bp)
TGGGCATTCAGCAACGCTTGTCTTA
LOC_Os08g13360
OsAffx.16975.1.S1_at--185--6031Chr08:7941675..7941699 (25 bp)
GAGAGGACTCCCAAAGGCGACGGAA
LOC_Os08g13360
OsAffx.16975.1.S1_at--672--10451Chr08:7941634..7941658 (25 bp)
TTAGATTTACCTGCTCTGCTTCAAT
LOC_Os08g13360
OsAffx.16975.1.S1_at--501--3171Chr08:7941550..7941574 (25 bp)
CAATGCCCAAATTACAGGTCCTTTC
LOC_Os08g13360
OsAffx.16975.1.S1_at--90--5011Chr08:7941520..7941544 (25 bp)
GCATGTGTAGACACTTCTGGCTGCC
LOC_Os08g13360
OsAffx.16975.1.S1_at--24--3951Chr08:7941479..7941503 (25 bp)
CGGAATGGTTGATGGCCTTGTGCAT
LOC_Os08g13360
OsAffx.16975.1.S1_at--988--5411Chr08:7941323..7941472 (25 bp)
GAAGCCTCGGGTTTGAGTTTTCACA
LOC_Os08g13360
Target Sequence 
GTTCTGGCCACACTTTAACTTGGATTGGTGGGAGTCGCATGGTTCTTTTTGGTGGTAGAGGATCAGAATTTGATGTGCTT
AATGATGTCTGGCTGCTTGATATCAATGAAAGGTACCCAAAATGGAAGGAGCTAAAGTATGACCTGTCTAGTGTTCTAGG
TGAAATGCCTTTTCCACGGGTTGGGCATTCAGCAACGCTTGTCTTAGGTGGTAAAATCCTAGTGTATGGTGGAGAGGACT
CCCAAAGGCGACGGAAGGATGACTTTTGGACCTTAGATTTACCTGCTCTGCTTCAATTTGAGTCAGGTTCCAAGAAAATG
ACAAAAAGGATGTGGAAAAAGCTAAGAATTGATGGTCAATGCCCAAATTACAGGTCCTTTCATGGGGCATGTGTAGACAC
TTCTGGCTGCCATGTGTATATTTTTGGCGGAATGGTTGATGGCCTTGTGCATCCTGCTGAAGCCTCGGGTTTGAGTTTTC
ACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis