Browse Element(s) Details


Os.48839.1.S1_at

Description gb:AK069639.1
DB_XREF= gi:32979663
TID=Os.48839.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.48839 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023026D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023026D01, full insert sequence.
FL= gb:AK069639.1 gb:AK060252.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1335011/11ubiquitin carboxyl-terminal hydrolase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13320Os.5653.1.S1_at9/118+7905456..7910079expressed protein
LOC_Os08g13320OsAffx.11856.1.S1_at1/118+7905456..7910079expressed protein
LOC_Os08g13330NANA8+7914634..7918188retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g13340NANA8+7919380..7923621retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g13350Os.48839.1.S1_at11/118+7933379..7938142ubiquitin carboxyl-terminal hydrolase family protein, putative, expressed
LOC_Os08g13360Os.27001.2.S1_at11/118+7940273..7945595F-box protein ZEITLUPE/FKF/LKP/ADAGIO family, putative, expressed
LOC_Os08g13360OsAffx.16975.1.S1_at11/118+7940273..7945595F-box protein ZEITLUPE/FKF/LKP/ADAGIO family, putative, expressed
LOC_Os08g13360Os.27001.3.A1_a_at11/118+7940273..7945595F-box protein ZEITLUPE/FKF/LKP/ADAGIO family, putative, expressed
LOC_Os08g13369NANA8+7947133..7949172NA
LOC_Os08g13380OsAffx.5802.1.S1_at11/118+7949938..7950678hypothetical protein
LOC_Os08g13390Os.55149.1.S1_at11/118+7957286..7962203expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004221molecular_functionubiquitin thiolesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48839.1.S1_at--1162--4411Chr08:7937604..7937628 (25 bp)
GCCTTGATGGGCTAGTCTTAAGATG
LOC_Os08g13350
Os.48839.1.S1_at--352--4111Chr08:7937640..7937664 (25 bp)
CGAACATCGATGTAATACCAGTCTG
LOC_Os08g13350
Os.48839.1.S1_at--67--3871Chr08:7937662..7937686 (25 bp)
CTGAGCTTAGCTTTGTTCTGGCAGC
LOC_Os08g13350
Os.48839.1.S1_at--806--6711Chr08:7937676..7937700 (25 bp)
GTTCTGGCAGCTACTCCTAGAAAGA
LOC_Os08g13350
Os.48839.1.S1_at--420--1431Chr08:7937698..7937722 (25 bp)
AGAAAATGCCTGTCAAAATCTTTGG
LOC_Os08g13350
Os.48839.1.S1_at--152--871Chr08:7937776..7937800 (25 bp)
ATGGCTAAGTACAATATCGGTGGTC
LOC_Os08g13350
Os.48839.1.S1_at--867--491Chr08:7937791..7937815 (25 bp)
ATCGGTGGTCTATTATTTGGGTCTT
LOC_Os08g13350
Os.48839.1.S1_at--1026--2111Chr08:7937887..7937911 (25 bp)
ACATGGATGGCTTGAGTTGTACCTT
LOC_Os08g13350
Os.48839.1.S1_at--772--6971Chr08:7937905..7937929 (25 bp)
GTACCTTGGAGCTGTTTGGAGATTC
LOC_Os08g13350
Os.48839.1.S1_at--860--8151Chr08:7937933..7937957 (25 bp)
GGAATCGAGTTCACAAGGTTTTTTG
LOC_Os08g13350
Os.48839.1.S1_at--1094--10471Chr08:7938080..7938104 (25 bp)
TTAATTCCGGTCTCTGTAAGATATG
LOC_Os08g13350
Target Sequence 
GCCTTGATGGGCTAGTCTTAAGATGCGAAGATACATCGAACATCGATGTAATACCAGTCTGAGCTTAGCTTTGTTCTGGC
AGCTACTCCTAGAAAGAAAATGCCTGTCAAAATCTTTGGATTTATTTCGTGGGATGTTAGAGTTGAAAGATGTGCAAATG
CAGGGTGTGATTATGGCTAAGTACAATATCGGTGGTCTATTATTTGGGTCTTGGTTGTATAGTATTTTATGTATTTTTTC
TCTCTTCTTTTTTCTTTCTTTTGGTGATCTATGGATACTTGTAACATGGATGGCTTGAGTTGTACCTTGGAGCTGTTTGG
AGATTCAGTGGAATCGAGTTCACAAGGTTTTTTGGTGAAGAATTCCAGCAGNATCATAAGTCGNTCCAGTTTCAATTTAT
GCACCTTTACTCTAAAACTTNCTGGTCTCTTGGTNGGTATATTTTCATGGACATAATGTATAAANTTTCGTTTGTANTTA
ATTCCGGTCTCTGTAAGATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48839.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis