Browse Element(s) Details


Os.5653.1.S1_at

Description gb:AK067127.1
DB_XREF= gi:32977145
TID=Os.5653.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5653 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013096C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096C05, full insert sequence.
FL= gb:AK067127.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g133209/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13259NANA8+7883340..7884451NA
LOC_Os08g13270Os.52143.1.S1_at3/118+7886057..7887702expressed protein
LOC_Os08g13270OsAffx.10952.2.S1_at1/118+7886057..7887702expressed protein
LOC_Os08g13280Os.8568.1.S1_at1/118+7888628..7889559expressed protein
LOC_Os08g13290NANA8+7891520..7894851transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g13300Os.14491.2.S1_x_at4/118+7896323..7901427transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g13300Os.47463.1.S1_x_at3/118+7896323..7901427transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g13310OsAffx.29177.1.S1_at11/118+7901898..7902669hypothetical protein
LOC_Os08g13320Os.5653.1.S1_at9/118+7905456..7910079expressed protein
LOC_Os08g13320OsAffx.11856.1.S1_at1/118+7905456..7910079expressed protein
LOC_Os08g13330NANA8+7914634..7918188retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g13340NANA8+7919380..7923621retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g13350Os.48839.1.S1_at11/118+7933379..7938142ubiquitin carboxyl-terminal hydrolase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5653.1.S1_at--638--6311Chr08:7909560..7909584 (25 bp)
GATGACGGCAAGGACCCAAGTGCTA
LOC_Os08g13320
Os.5653.1.S1_at--498--7911Chr08:7909641..7909665 (25 bp)
GGTTGCAATCTGTATATTTCACTCA
LOC_Os08g13320
Os.5653.1.S1_at--891--1091Chr08:7909674..7909698 (25 bp)
AGTGTTATTGTATCGACCAGCCCTT
LOC_Os08g13320
Os.5653.1.S1_at--192--1671Chr08:7909692..7909716 (25 bp)
AGCCCTTGTGCCATAGCCTTGGTTC
LOC_Os08g13320
Os.5653.1.S1_at--944--6331Chr08:7909746..7909770 (25 bp)
GATGCTTGTGTTTGTGTTCTGCAAC
LOC_Os08g13320
Os.5653.1.S1_at--188--2931Chr08:7909806..7909830 (25 bp)
AAGGACTGTGGATGGCTCTTTGTGC
LOC_Os08g13320
Os.5653.1.S1_at--1113--171Chr08:7910018..7910042 (25 bp)
ATTTATAGCTGGGAATGCCTCATCT
LOC_Os08g13320
Os.5653.1.S1_at--1010--4451Chr08:7910034..7910058 (25 bp)
GCCTCATCTATAAGAGAGAGCTGCT
LOC_Os08g13320
Os.5653.1.S1_at--245--6011Chr08:7910049..7910073 (25 bp)
GAGAGCTGCTGTCAAGTGAGCATAT
LOC_Os08g13320
Os.5653.1.S1_at--45--7931NONE
GGTTGGTTGCTTGCTACGGCACTCA
NONE
Os.5653.1.S1_at--226--4851Chr08:7910097..7910120 (24 bp)
GCTACGGCACTCACTATTTGATTAT
NONE
Target Sequence 
GATGACGGCAAGGACCCAAGTGCTAATTAATCACCCCACCCCTTGCACTANGAAGATAATCTGTTGCAACTGCTATGATT
GGGTTGCAATCTGTATATTTCACTCAGAAGCTGTAGTGTTATTGTATCGACCAGCCCTTGTGCCATAGCCTTGGTTCACG
GTAATAAAACATGGAGGGAGAAGCTGGATGCTTGTGTTTGTGTTCTGCAACAGCCATAGAAAATGGAACACTAGCTGGAA
TCCAACAAGGACTGTGGATGGCTCTTTGTGCCAAGNAAAAAANAAAGAATGTTTGCAAAGCGCTGAGATAAAAACATCTN
CTTCCATCTCCAGTCTTGAATTNGTTTCCATATAAAACTGCATGTTGTAATGTCATATTTGACTTGTTGAGACCTAAAAG
GTCAACTGTATGTGCATTTGGTGGACATGGCCTGCGAAGCAAATTTGATTACATTCTAAATTTATAGCTGGGAATGCCTC
ATCTATAAGAGAGAGCTGCTGTCAAGTGAGCATATGAATGTAACTGGTTGGTTGCTTGCTACGGCACTCACTATTTGATT
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5653.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis