Browse Element(s) Details


OsAffx.16976.1.S1_at

Description tigr:9636.m01325
TID=OsAffx.16976.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Lectin (probable mannose binding), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1342011/11D-mannose binding lectin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13390Os.55149.1.S1_at11/118+7957286..7962203expressed protein
LOC_Os08g13400NANA8+7966587..7966832hypothetical protein
LOC_Os08g13410NANA8+7970000..7972730retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13420OsAffx.16976.1.S1_at11/118+7976216..7979195D-mannose binding lectin family protein
LOC_Os08g13430Os.18400.1.S1_at11/118+7984754..7987386expressed protein
LOC_Os08g13440Os.27483.1.S1_at11/118+7988061..7989374Germin-like protein subfamily 1 member 7 precursor, putative, expressed
LOC_Os08g13450NANA8+8000829..8001272hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16976.1.S1_at--479--1971Chr08:7978129..7978153 (25 bp)
ACTGATTGATGGCACTGGAATGGCA
LOC_Os08g13420
OsAffx.16976.1.S1_at--1011--6331Chr08:7978303..7978327 (25 bp)
GATGCTTCTTGAGATCATTAGTTGC
LOC_Os08g13420
OsAffx.16976.1.S1_at--994--311Chr08:7978384..7978408 (25 bp)
ATACGAGTATGTGGTCTCCGGCGGA
LOC_Os08g13420
OsAffx.16976.1.S1_at--87--9491Chr08:7978398..7978422 (25 bp)
TCTCCGGCGGACTGAAAGAAGTGGC
LOC_Os08g13420
OsAffx.16976.1.S1_at--281--10851Chr08:7978477..7978498 (22 bp)
TTGGTGCACTCAAAACGAGCCGATG
LOC_Os08g13420
OsAffx.16976.1.S1_at--505--5591Chr08:7978616..7978640 (25 bp)
GAAATCTGATTGTCTCTACAAGAGT
LOC_Os08g13420
OsAffx.16976.1.S1_at--341--8491Chr08:7978692..7979069 (25 bp)
TGGTAAGGGATACTTCTTGGCCATT
LOC_Os08g13420
OsAffx.16976.1.S1_at--283--3611Chr08:7979066..7979090 (25 bp)
CATTGTTTCAGCGATCTCGAACACA
LOC_Os08g13420
OsAffx.16976.1.S1_at--349--5251Chr08:7979098..7979122 (25 bp)
GAATCATTCCTAATCCAGCAGCAAT
LOC_Os08g13420
OsAffx.16976.1.S1_at--823--3071Chr08:7979120..7979144 (25 bp)
AATAACCACCATACTGATTCAGGGA
LOC_Os08g13420
OsAffx.16976.1.S1_at--67--1071Chr08:7979140..7979164 (25 bp)
AGGGAGAACTATACCCTTCTACTCT
LOC_Os08g13420
Target Sequence 
ACTGATTGATGGCACTGGAATGGCAAAGATTGCAGATTTCGGCTTGGCAAAGCTTCTGATAGGGAACCAAACCAAGACCT
TCACTGGAGTCCGGGGCACACGTGGCTATCTCGCGCCAGAGTGGAGTAAGAACACGGCGATAACTGTTAAGGTAGATGTC
TACAGCTTCGGCGTGATGCTTCTTGAGATCATTAGTTGCAGGAAGAGCATGGAGCTTAAGATGGCCGGCGAGGAGTGCAA
CATCTCCGAGTGGGCATACGAGTATGTGGTCTCCGGCGGACTGAAAGAAGTGGCTGCCGGAGAAGATGTCGATGAGGTTG
AGCTTGAACGGATGGTGAAGATCGGTATTTGGTGCACTCAAAACGAGCCGATGAGAAATCTGATTGTCTCTACAAGAGTA
CTTGTGTATGACAAGTATCTGAATGGATGGATGGTCCGGGTAAAAACATATGGTAAGGGATACTTCTTGGCCATTGTTTC
AGCGATCTCGAACACAAACTTCAGAATCATTCCTAATCCAGCAGCAATAACCACCATACTGATTCAGGGAGAACTATACC
CTTCTACTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16976.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis