Browse Element(s) Details


OsAffx.16977.1.S1_at

Description tigr:9636.m01330
TID=OsAffx.16977.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1346011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13430Os.18400.1.S1_at11/118+7984754..7987386expressed protein
LOC_Os08g13440Os.27483.1.S1_at11/118+7988061..7989374Germin-like protein subfamily 1 member 7 precursor, putative, expressed
LOC_Os08g13450NANA8+8000829..8001272hypothetical protein
LOC_Os08g13460OsAffx.16977.1.S1_at11/118+8004693..8008003expressed protein
LOC_Os08g13460OsAffx.28520.1.S1_at1/118+8004693..8008003expressed protein
LOC_Os08g13470OsAffx.16978.1.S1_at11/118+8012620..8014275hypothetical protein
LOC_Os08g13480OsAffx.29178.1.S1_at11/118+8016704..8017150hypothetical protein
LOC_Os08g13490OsAffx.16979.1.S1_at9/118+8021513..8023740hypothetical protein
LOC_Os08g13490Os.18665.1.S1_at1/118+8021513..8023740hypothetical protein
LOC_Os08g13500OsAffx.1647.1.S1_at2/118+8025895..8028825retrotransposon protein, putative, unclassified
LOC_Os08g13510OsAffx.22722.1.S1_x_at1/118+8029497..8032049retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13520NANA8+8032317..8034364retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16977.1.S1_at--567--6471Chr08:8005433..8005457 (25 bp)
GATAAACTCAGTAATTCCAAGGCTG
LOC_Os08g13460
OsAffx.16977.1.S1_at--325--8811Chr08:8005844..8005868 (25 bp)
TGTTGCTTACATGTTCGCTGAACTC
LOC_Os08g13460
OsAffx.16977.1.S1_at--108--5111Chr08:8007547..8007571 (25 bp)
GCACGGAGGCGATCTTTACGCTGTA
LOC_Os08g13460
OsAffx.16977.1.S1_at--603--6391Chr08:8007557..8007581 (25 bp)
GATCTTTACGCTGTATTCAGTCGGG
LOC_Os08g13460
OsAffx.16977.1.S1_at--941--6032Chr08:8007605..8007629 (25 bp)
GAGATAGAATCGACCCGCGTTGATA
LOC_Os08g13460
OsAffx.16977.1.S1_at--1152--8831Chr08:8007625..8007649 (25 bp)
TGATAAACAGGTCGCTCTGTCTCTG
LOC_Os08g13460
OsAffx.16977.1.S1_at--611--4811Chr08:8007638..8007662 (25 bp)
GCTCTGTCTCTGAATCGGCGATGTG
LOC_Os08g13460
OsAffx.16977.1.S1_at--152--7492Chr08:8007660..8007684 (25 bp)
GTGGGACAAAACTCGATTGCTGGAT
LOC_Os08g13460
OsAffx.16977.1.S1_at--937--8553Chr08:8007680..8007704 (25 bp)
TGGATGGATTCAGTCCGAGCCCAAG
LOC_Os08g13460
OsAffx.16977.1.S1_at--862--9731Chr08:8007783..8007807 (25 bp)
TCAATCTGGCCGGAGCTAAAGCTTC
LOC_Os08g13460
OsAffx.16977.1.S1_at--435--5991Chr08:8007845..8007869 (25 bp)
GAGACTACGCCCGTGGGTCCCAGAT
LOC_Os08g13460
Target Sequence 
GATAAACTCAGTAATTCCAAGGCTGAAGACAACACTTCAAACAAGTTATGTTGCTTACATGTTCGCTGAACTCAAGGAGC
AGCTGAACGGCAGGGGGAACACGACCGACCGTGCGCACGGAGGCGATCTTTACGCTGTATTCAGTCGGGGTGGGTGCCCC
CGGGGAGGCGATGAGATAGAATCGACCCGCGTTGATAAACAGGTCGCTCTGTCTCTGAATCGGCGATGTGGGACAAAACT
CGATTGCTGGATGGATTCAGTCCGAGCCCAAGCGCGGCGCGCGGACCGCGACCTAGGAGTAGAGGGCGAGGCGTACCTGC
TCTCCACGGAAGCCGGCGGCGAGGGCGCCGTCAATCTGGCCGGAGCTAAAGCTTCCCGCCGGCCGGCCGCCGTTGCCGTC
GCCGATGCCGCGGAGACTACGCCCGTGGGTCCCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16977.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis