Browse Element(s) Details


OsAffx.16978.1.S1_at

Description tigr:9636.m01331
TID=OsAffx.16978.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1347011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13440Os.27483.1.S1_at11/118+7988061..7989374Germin-like protein subfamily 1 member 7 precursor, putative, expressed
LOC_Os08g13450NANA8+8000829..8001272hypothetical protein
LOC_Os08g13460OsAffx.16977.1.S1_at11/118+8004693..8008003expressed protein
LOC_Os08g13460OsAffx.28520.1.S1_at1/118+8004693..8008003expressed protein
LOC_Os08g13470OsAffx.16978.1.S1_at11/118+8012620..8014275hypothetical protein
LOC_Os08g13480OsAffx.29178.1.S1_at11/118+8016704..8017150hypothetical protein
LOC_Os08g13490OsAffx.16979.1.S1_at9/118+8021513..8023740hypothetical protein
LOC_Os08g13490Os.18665.1.S1_at1/118+8021513..8023740hypothetical protein
LOC_Os08g13500OsAffx.1647.1.S1_at2/118+8025895..8028825retrotransposon protein, putative, unclassified
LOC_Os08g13510OsAffx.22722.1.S1_x_at1/118+8029497..8032049retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13520NANA8+8032317..8034364retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16978.1.S1_at--156--6571Chr08:8014030..8014054 (25 bp)
GATTCACACATAATTATAGAGCTTG
LOC_Os08g13470
OsAffx.16978.1.S1_at--871--5911Chr08:8014012..8014036 (25 bp)
GAGCTTGATCTAGATACGATTGCCG
LOC_Os08g13470
OsAffx.16978.1.S1_at--176--6491Chr08:8013720..8014024 (25 bp)
GATACGATTGCCGACAGGTCTGTAA
LOC_Os08g13470
OsAffx.16978.1.S1_at--830--6493Chr07:29410128..29410152 (25 bp)
GATAGCAGCGTTGTGCATACCGATA
NONE
OsAffx.16978.1.S1_at--1035--4952Chr08:11068271..11068295 (25 bp)
GCATACCGATATGGGATCAGTCCAA
NONE
OsAffx.16978.1.S1_at--262--9212Chr08:11068251..11068275 (25 bp)
TCCAAGAGTTGATGGGTCATGGTCT
NONE
OsAffx.16978.1.S1_at--122--951Chr08:8012753..8012777 (25 bp)
AGGAAGCACCGATGGCCAGCGGAAT
LOC_Os08g13470
OsAffx.16978.1.S1_at--268--6231Chr08:8012743..8012767 (25 bp)
GATGGCCAGCGGAATCGATCAGAAC
LOC_Os08g13470
OsAffx.16978.1.S1_at--848--5252Chr08:11068194..11068218 (25 bp)
GAATCGATCAGAACCTGCGTCAGCA
NONE
OsAffx.16978.1.S1_at--949--5432Chr08:11068184..11068208 (25 bp)
GAACCTGCGTCAGCATGAACATATG
NONE
OsAffx.16978.1.S1_at--853--5312Chr08:11068122..11068146 (25 bp)
GAAGGGAGTGTAGACCTCACCTCAC
NONE
Target Sequence 
GATTCACACATAATTATAGAGCTTGATCTAGATACGATTGCCGACAGGTCTGTAAAAAGGAAGCTAGGAAGCTATGGACA
GGGGGATAGCAGCGTTGTGCATACCGATATGGGATCAGTCCAAGAGTTGATGGGTCATGGTCTGGATGTGGAGGAAGCAC
CGATGGCCAGCGGAATCGATCAGAACCTGCGTCAGCATGAACATATGGAGCGGAAAATTAGGACTCCAGAAAGGGAGGGA
AGGGGAAGGGAGTGTAGACCTCACCTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16978.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis