Browse Element(s) Details


OsAffx.17054.1.S1_at

Description tigr:9636.m01801
TID=OsAffx.17054.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1788011/11hypothetical protein
LOC_Os08g179601/11hypothetical protein
LOC_Os03g367001/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g289301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17850OsAffx.17052.1.S1_at11/118+10943776..10944434hAT family dimerisation domain containing protein
LOC_Os08g17860OsAffx.21756.3.S1_x_at1/118+10945255..10949229transposon protein, putative, Pong sub-class
LOC_Os08g17870OsAffx.17053.1.S1_x_at11/118+10953899..10960966expressed protein
LOC_Os08g17870OsAffx.17053.1.S1_at11/118+10953899..10960966expressed protein
LOC_Os08g17870Os.50996.1.S1_x_at7/118+10953899..10960966expressed protein
LOC_Os08g17880OsAffx.17054.1.S1_at11/118+10964219..10965351hypothetical protein
LOC_Os08g17890Os.45173.1.S1_x_at1/118+10969748..10976599retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g17900OsAffx.20733.1.A1_x_at1/118+10977364..10978215retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g17910OsAffx.22699.1.S1_x_at2/118+10981041..10985882retrotransposon protein, putative, unclassified, expressed
LOC_Os08g17910OsAffx.20553.1.S1_at1/118+10981041..10985882retrotransposon protein, putative, unclassified, expressed
LOC_Os08g17920NANA8+10987261..10987488hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17054.1.S1_at--374--3391Chr08:10965244..10965268 (25 bp)
CAGCGTCGGAGCTGTATGCGAGCTA
LOC_Os08g17880
OsAffx.17054.1.S1_at--998--3871Chr08:10965238..10965257 (20 bp)
CTGTATGCGAGCTAGACTTGAGGAA
LOC_Os08g17880
OsAffx.17054.1.S1_at--686--5577Chr06:20861040..20861063 (24 bp)
GAAATCGCGTGAAAGTTCTAAAATG
NONE
OsAffx.17054.1.S1_at--874--6717Chr10:22394020..22394039 (20 bp)
GTTCTAAAATGTCCTTGGGCCCACA
NONE
OsAffx.17054.1.S1_at--592--8732Chr07:10503570..10504008 (25 bp)
TGTCATATCTTCCATCTTTCTTCAA
NONE
OsAffx.17054.1.S1_at--218--432Chr11:8358424..8358455 (25 bp)
ATCTTTCTTCAACCGGGAGCGCCGT
NONE
OsAffx.17054.1.S1_at--523--1651Chr08:10964654..10964678 (25 bp)
AGCGCCGTCGTCTACGGAGTTGAGC
LOC_Os08g17880
OsAffx.17054.1.S1_at--394--9411Chr08:10964647..10964671 (25 bp)
TCGTCTACGGAGTTGAGCGCCAGGA
LOC_Os08g17880
OsAffx.17054.1.S1_at--681--6651Chr08:10964636..10964660 (25 bp)
GTTGAGCGCCAGGAGCACCGACAGT
LOC_Os08g17880
OsAffx.17054.1.S1_at--1085--3352Chr02:25147822..25147873 (24 bp)
CACCGACAGTCGTGCGGCGGCAGCT
NONE
OsAffx.17054.1.S1_at--493--6231Chr08:10964456..10964480 (25 bp)
GATGGCCTCGAGATCAAGATCGTGG
LOC_Os08g17880
Target Sequence 
CAGCGTCGGAGCTGTATGCGAGCTAGACTTGAGGAAGGAGAAATCGCGTGAAAGTTCTAAAATGTCCTTGGGCCCACATG
TCATATCTTCCATCTTTCTTCAACCGGGAGCGCCGTCGTCTACGGAGTTGAGCGCCAGGAGCACCGACAGTCGTGCGGCG
GCAGCTGTCCCGGTTGTGGCAGCGGCGACGCCAACGACGACGCACGGCGATGGCGGCTGTGGCAACTGCGGCGCGGTGGT
GACTACGCCTTTGCCGCGTGGGGCGGCGGTGGCGAGGGTGAGGACCACGACGAGGAGGCGGCGGCGGATGGCCTCGAGAT
CAAGATCGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17054.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis