Browse Element(s) Details


OsAffx.17186.1.S1_at

Description tigr:9636.m02697
TID=OsAffx.17186.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2729010/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27250Os.54554.1.S1_at11/118+16506958..16509404expressed protein
LOC_Os08g27260OsAffx.29379.1.S1_at11/118+16512898..16513149hypothetical protein
LOC_Os08g27270OsAffx.21897.5.S1_x_at6/118+16518364..16521304retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27280NANA8+16521622..16527714retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27290OsAffx.17186.1.S1_at10/118+16529002..16531708hAT family dimerisation domain containing protein
LOC_Os08g27300OsAffx.1412.2.S1_at1/118+16539389..16542313retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27310NANA8+16543611..16545116retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27320NANA8+16545789..16548736retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27330NANA8+16552539..16552946hypothetical protein
LOC_Os08g27340NANA8+16555069..16558146retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17186.1.S1_at--516--7391Chr08:16530249..16530273 (25 bp)
GGTTTTTGGGCCTCAAACATGTGGA
LOC_Os08g27290
OsAffx.17186.1.S1_at--935--4631NONE
GCGTTGCTTGAAATGCTTGCTCTTG
NONE
OsAffx.17186.1.S1_at--416--9691Chr08:16529390..16529414 (25 bp)
TCACGGAAATGGATCATCGCTTCAA
LOC_Os08g27290
OsAffx.17186.1.S1_at--545--7131Chr08:16529330..16529354 (25 bp)
GTCTTGATCCAAGAGAGTCCTTCTC
LOC_Os08g27290
OsAffx.17186.1.S1_at--32--6391Chr08:16529287..16529311 (25 bp)
GATCGCACGGTTGACGGAGATGTAT
LOC_Os08g27290
OsAffx.17186.1.S1_at--184--751Chr08:16529268..16529292 (25 bp)
ATGTATGACCAAGACTTCTCTCTTC
LOC_Os08g27290
OsAffx.17186.1.S1_at--897--5671Chr08:16529212..16529236 (25 bp)
GACATTTATTTTACACGTGCGACGT
LOC_Os08g27290
OsAffx.17186.1.S1_at--688--6531Chr08:16529181..16529205 (25 bp)
GATTTCACTACTTGTCATGATCTTG
LOC_Os08g27290
OsAffx.17186.1.S1_at--810--10291Chr08:16529112..16529136 (25 bp)
TTTCCATTGGTCTATCGTCTTATCG
LOC_Os08g27290
OsAffx.17186.1.S1_at--166--7151Chr08:16529096..16529120 (25 bp)
GTCTTATCGAGTTAGCATTGCTTCT
LOC_Os08g27290
OsAffx.17186.1.S1_at--673--9071Chr08:16529078..16529102 (25 bp)
TGCTTCTACCTGTGGCAACGGCATC
LOC_Os08g27290
Target Sequence 
GGTTTTTGGGCCTCAAACATGTGGAGGATACAACATCAAATGCATTGAAGAAAGCGTTGCTTGAAATGCTTGCTCTTGAT
TCTATTATCACGGAAATGGATCATCGCTTCAATGAGGTATCATCTGAGTTGCTTGTTTGCTTCTCTTGTCTTGATCCAAG
AGAGTCCTTCTCTAAGTTTGATGTTGATAAGATCGCACGGTTGACGGAGATGTATGACCAAGACTTCTCTCTTCTTGATC
GTTCTAATATAAAGGATCAACTTGAGACATTTATTTTACACGTGCGACGTGTTGATGATTTCACTACTTGTCATGATCTT
GGTAGTTTGGCTATGAAGATGGTTGAGACACAGAAGCATATTGTTTTTCCATTGGTCTATCGTCTTATCGAGTTAGCATT
GCTTCTACCTGTGGCAACGGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17186.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis