Browse Element(s) Details


OsAffx.17407.1.S1_at

Description tigr:9636.m03893
TID=OsAffx.17407.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3863011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38580Os.57036.1.S1_at11/118+24256547..24257619Harpin-induced protein 1 containing protein, expressed
LOC_Os08g38590OsAffx.6071.1.S1_at11/118+24258787..24261024SRF-type transcription factor family protein, expressed
LOC_Os08g38600Os.10254.1.S1_at11/118+24265096..24268481Copine family protein, expressed
LOC_Os08g38610OsAffx.6072.1.S1_at10/118+24269343..24273295pentatricopeptide, putative
LOC_Os08g38620Os.14799.1.S1_at11/118+24274864..24279963expressed protein
LOC_Os08g38630OsAffx.17407.1.S1_at11/118+24281436..24282002hypothetical protein
LOC_Os08g38640NANA8+24283586..24287882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g38650OsAffx.6073.1.S1_at11/118+24293566..24294862hypothetical protein
LOC_Os08g38660NANA8+24295998..24301351retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17407.1.S1_at--319--4351Chr08:24281640..24281664 (25 bp)
CCAGCGCGGCCTTGTTGGGAATGTT
LOC_Os08g38630
OsAffx.17407.1.S1_at--250--4451Chr08:24281648..24281672 (25 bp)
GCCTTGTTGGGAATGTTGCCTTCAT
LOC_Os08g38630
OsAffx.17407.1.S1_at--151--5271Chr08:24281658..24281682 (25 bp)
GAATGTTGCCTTCATCGCCGAGTTG
LOC_Os08g38630
OsAffx.17407.1.S1_at--771--10511Chr08:24281668..24281692 (25 bp)
TTCATCGCCGAGTTGGCCTTGTCGC
LOC_Os08g38630
OsAffx.17407.1.S1_at--954--6031Chr08:24281677..24281701 (25 bp)
GAGTTGGCCTTGTCGCGGCCTCCAT
LOC_Os08g38630
OsAffx.17407.1.S1_at--1078--4271Chr08:24281858..24281882 (25 bp)
CCTGAGCTGCCTCGATGAGGAAGTA
LOC_Os08g38630
OsAffx.17407.1.S1_at--260--10011Chr08:24281881..24281905 (25 bp)
TAGTAGGCGTCGGAAGAACCCCCAG
LOC_Os08g38630
OsAffx.17407.1.S1_at--313--4211Chr08:24281900..24281924 (25 bp)
CCCCAGCTCTGACTCGAAGAAGCAG
LOC_Os08g38630
OsAffx.17407.1.S1_at--1068--5371Chr08:24281915..24281939 (25 bp)
GAAGAAGCAGGCGACCCCGTGCGAC
LOC_Os08g38630
OsAffx.17407.1.S1_at--339--1811Chr08:24281928..24281952 (25 bp)
ACCCCGTGCGACGAGGATAGCATGA
LOC_Os08g38630
OsAffx.17407.1.S1_at--543--4091Chr08:24281936..24281960 (25 bp)
CGACGAGGATAGCATGACGAGCTTC
LOC_Os08g38630
Target Sequence 
CCAGCGCGGCCTTGTTGGGAATGTTGCCTTCATCGCCGAGTTGGCCTTGTCGCGGCCTCCATCGTCATCGTCGCCGGCGT
CATCCTGCTGCTCGGCGTCGCGTGGTTCGTCCACAGGTACAGGAATCAAAGGAAGTGGAGCATGAAGGATGCTGCCGGCG
ACAAGTTGAGGTGGGTGGTCACGTCGTTCCACAAGCCGGAGTTCAACGAGGAGGACATCCTGAGCTGCCTCGATGAGGAA
GTAGTAGGCGTCGGAAGAACCCCCAGCTCTGACTCGAAGAAGCAGGCGACCCCGTGCGACGAGGATAGCATGACGAGCTT
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17407.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis