Browse Element(s) Details


OsAffx.17514.1.S1_at

Description tigr:9636.m04561
TID=OsAffx.17514.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4473011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44690Os.25411.1.A1_at6/118+27952454..27953365transposon protein, putative, Pong sub-class
LOC_Os08g44700NANA8+27955994..27962149retrotransposon protein, putative, unclassified
LOC_Os08g44710NANA8+27962765..27966070retrotransposon protein, putative, unclassified
LOC_Os08g44720NANA8+27968634..27971367retrotransposon protein, putative, unclassified
LOC_Os08g44730OsAffx.17514.1.S1_at11/118+27978031..27978466hypothetical protein
LOC_Os08g44740OsAffx.17515.1.S1_at11/118+27979966..27980923hypothetical protein
LOC_Os08g44750Os.5091.1.S1_at11/118+27985889..27988746nodulin MtN21 family protein, putative, expressed
LOC_Os08g44760Os.52402.1.S1_at11/118+27990463..27993793expressed protein
LOC_Os08g44760Os.52402.2.S1_at11/118+27990463..27993793expressed protein
LOC_Os08g44770Os.5522.1.S1_at10/118+27999601..28002662Superoxide dismutase, chloroplast precursor, putative, expressed
LOC_Os08g44780Os.50081.1.S1_x_at11/118+28002729..28004421expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17514.1.S1_at--53--2811Chr08:27978293..27978317 (25 bp)
AATGTCCACCCTCTCCGGAAGGGAG
LOC_Os08g44730
OsAffx.17514.1.S1_at--211--1031Chr08:27978318..27978342 (25 bp)
AGGTCAGGGGCGACCCATGTGATAT
LOC_Os08g44730
OsAffx.17514.1.S1_at--766--771Chr08:27978334..27978358 (25 bp)
ATGTGATATCCCCTTCATCTATAAA
LOC_Os08g44730
OsAffx.17514.1.S1_at--325--6491Chr08:27978338..27978362 (25 bp)
GATATCCCCTTCATCTATAAAAGGA
LOC_Os08g44730
OsAffx.17514.1.S1_at--856--9952Chr08:27978353..27978377 (25 bp)
TATAAAAGGAAGACCCTGCCCTACG
LOC_Os08g44730
OsAffx.17514.1.S1_at--598--2911Chr08:27978358..27978382 (25 bp)
AAGGAAGACCCTGCCCTACGAGTCA
LOC_Os08g44730
OsAffx.17514.1.S1_at--590--2771Chr08:27978362..27978386 (25 bp)
AAGACCCTGCCCTACGAGTCAAGGG
LOC_Os08g44730
OsAffx.17514.1.S1_at--772--7631Chr08:27978385..27978409 (25 bp)
GGGACGTCTCTGGAAGAACCAGATT
LOC_Os08g44730
OsAffx.17514.1.S1_at--377--2651Chr08:27978398..27978422 (25 bp)
AAGAACCAGATTCCGGAGAAAGGCT
LOC_Os08g44730
OsAffx.17514.1.S1_at--435--6571Chr08:27978406..27978430 (25 bp)
GATTCCGGAGAAAGGCTGGCCAAGC
LOC_Os08g44730
OsAffx.17514.1.S1_at--318--3951Chr08:27978411..27978435 (25 bp)
CGGAGAAAGGCTGGCCAAGCCCTAG
LOC_Os08g44730
Target Sequence 
AATGTCCACCCTCTCCGGAAGGGAGAGGTCAGGGGCGACCCATGTGATATCCCCTTCATCTATAAAAGGAAGACCCTGCC
CTACGAGTCAAGGGGACGTCTCTGGAAGAACCAGATTCCGGAGAAAGGCTGGCCAAGCCCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17514.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis