Browse Element(s) Details


OsAffx.17598.1.S1_at

Description tigr:9637.m00559
TID=OsAffx.17598.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0793010/11hypothetical protein
LOC_Os08g111502/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07920OsAffx.17596.1.S1_at9/119+4041760..4044191nitrate-induced NOI protein, putative, expressed
LOC_Os09g07930OsAffx.17598.1.S1_at10/119+4062778..4067524hypothetical protein
LOC_Os09g07940NANA9+4073208..4076005retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07950Os.46995.1.S1_x_at1/119+4080684..4083576retrotransposon protein, putative, unclassified
LOC_Os09g07960OsAffx.29756.1.S1_at2/119+4085082..4092146retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17598.1.S1_at--701--5132Chr09:4066031..4066055 (25 bp)
GCAACGCCGGAAATTAACTACCCAG
LOC_Os09g07930
OsAffx.17598.1.S1_at--845--3291Chr09:4064695..4064717 (23 bp)
CACAGAGGTGTACTACTGGACCCAC
LOC_Os09g07930
OsAffx.17598.1.S1_at--1137--2171Chr09:4064638..4064662 (25 bp)
ACACAGGTGTGGTCCGCAAGTCATT
LOC_Os09g07930
OsAffx.17598.1.S1_at--878--7791Chr09:4064628..4064652 (25 bp)
GGTCCGCAAGTCATTCAAGCACATT
LOC_Os09g07930
OsAffx.17598.1.S1_at--1006--1491Chr09:4064611..4064635 (25 bp)
AGCACATTACATGTCCTTTCCTAAT
LOC_Os09g07930
OsAffx.17598.1.S1_at--280--1891Chr09:4064552..4064576 (25 bp)
ACGATTCTGCCACGTGCATGTGTGA
LOC_Os09g07930
OsAffx.17598.1.S1_at--1133--2551Chr09:4064479..4064503 (25 bp)
AACTGGCACAAATGAGGCCCTCCAA
LOC_Os09g07930
OsAffx.17598.1.S1_at--176--4731NONE
GCTGGTCCCAAATAAGGCGTGTGAT
NONE
OsAffx.17598.1.S1_at--170--1651Chr09:4062873..4062897 (25 bp)
AGCGAGTTCGTGACACCATGCATGC
LOC_Os09g07930
OsAffx.17598.1.S1_at--218--652Chr09:4062856..4062880 (25 bp)
ATGCATGCAGCGTTGCGACACTGGA
LOC_Os09g07930
OsAffx.17598.1.S1_at--812--5632Chr09:4062840..4062864 (25 bp)
GACACTGGATGGCTCGATCTATTGC
LOC_Os09g07930
Target Sequence 
GCAACGCCGGAAATTAACTACCCAGACACCACGTCTACACAGAGGTGTACTACTGGACCCACACGTAATGGACAAGGATC
AAGTGCTACACACCACACAGGTGTGGTCCGCAAGTCATTCAAGCACATTACATGTCCTTTCCTAATCCCACCCCAACCAC
CTACCACGCCGGGGTTCCCGACGATTCTGCCACGTGCATGTGTGATGTGGCTAAGGCGGGTGCACCACGCGGGAGGCACC
CCTTGCCCAAACAAACTGGCACAAATGAGGCCCTCCAAAGGGTTACCTACCCTCACGACTCTCCAACGTGGTATAAATGA
TCACAGTGCAATTAGTACTAAGACAAGCTGGTCCCAAATAAGGCGTGTGATAGTGGTGGCTGAACCCGCGCAGGCGGTGG
CTGCAAGTGGCAGCGAGTTCGTGACACCATGCATGCAGCGTTGCGACACTGGATGGCTCGATCTATTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis