Browse Element(s) Details


OsAffx.29756.1.S1_at

Description tigr:9637.m00568
TID=OsAffx.29756.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0800010/11hypothetical protein
LOC_Os09g079602/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07970OsAffx.10637.3.S1_s_at11/119+4094552..4098209transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07970OsAffx.10637.1.S1_s_at10/119+4094552..4098209transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07970OsAffx.10637.4.S1_s_at8/119+4094552..4098209transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07970OsAffx.10637.2.S1_at1/119+4094552..4098209transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07980OsAffx.32056.1.S1_at11/119+4099944..4104937transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07980OsAffx.29764.1.A1_s_at11/119+4099944..4104937transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07980OsAffx.32056.1.S1_x_at11/119+4099944..4104937transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07980OsAffx.30536.1.S1_x_at1/119+4099944..4104937transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07990NANA9+4113206..4114792retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08000OsAffx.29756.1.S1_at10/119+4117718..4121487hypothetical protein
LOC_Os09g08000OsAffx.23323.1.S1_at2/119+4117718..4121487hypothetical protein
LOC_Os09g08000OsAffx.23323.1.S1_x_at1/119+4117718..4121487hypothetical protein
LOC_Os09g08010OsAffx.5954.4.S1_x_at10/119+4124391..4126330hypothetical protein
LOC_Os09g08020OsAffx.5954.1.S1_x_at8/119+4127221..4132305retrotransposon protein, putative, unclassified
LOC_Os09g08020OsAffx.5954.5.S1_x_at6/119+4127221..4132305retrotransposon protein, putative, unclassified
LOC_Os09g08020OsAffx.5954.3.S1_x_at3/119+4127221..4132305retrotransposon protein, putative, unclassified
LOC_Os09g08020OsAffx.5954.2.S1_at1/119+4127221..4132305retrotransposon protein, putative, unclassified
LOC_Os09g08030NANA9+4134752..4135547LILLIM07, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29756.1.S1_at--52--7951Chr09:4118642..4118666 (25 bp)
GGATATGGGCAGTTCATTTCCAACC
LOC_Os09g08000
OsAffx.29756.1.S1_at--262--8653Chr09:21041595..21042031 (25 bp)
TGGGCAGTTCATTTCCAACCAATAT
NONE
OsAffx.29756.1.S1_at--57--1232Chr09:4118632..4118656 (25 bp)
AGTTCATTTCCAACCAATATCAGGG
LOC_Os09g08000
OsAffx.29756.1.S1_at--1049--10111NONE
TATCAGGGAAGGATCCAGTTTTCCT
NONE
OsAffx.29756.1.S1_at--142--2912Chr09:4117922..4117945 (24 bp)
AAGGATCCAGTTTTCCTTCACCGTG
LOC_Os09g08000
OsAffx.29756.1.S1_at--376--1212Chr09:4117914..4117938 (25 bp)
AGTTTTCCTTCACCGTGCAAGGATG
LOC_Os09g08000
OsAffx.29756.1.S1_at--180--1791Chr09:4117903..4117927 (25 bp)
ACCGTGCAAGGATGGCGGCTCGTCT
LOC_Os09g08000
OsAffx.29756.1.S1_at--1076--4352Chr09:21042770..21042794 (25 bp)
CCACTCATCAGCTAGTCGATCTATG
NONE
OsAffx.29756.1.S1_at--1057--10051Chr09:4117863..4117887 (25 bp)
TAGTCGATCTATGTCGACGGCCAAG
LOC_Os09g08000
OsAffx.29756.1.S1_at--835--10392Chr09:4117759..4117783 (25 bp)
TTTTCCTTCTTGCACATGGATGATG
LOC_Os09g08000
OsAffx.29756.1.S1_at--359--9032Chr09:4117749..4117773 (25 bp)
TGCACATGGATGATGACCCCGTCTT
LOC_Os09g08000
Target Sequence 
GGATATGGGCAGTTCATTTCCAACCAATATCAGGGAAGGATCCAGTTTTCCTTCACCGTGCAAGGATGGCGGCTCGTCTG
CCCCACTCATCAGCTAGTCGATCTATGTCGACGGCCAAGGATCTTGGGCGGGGCTAGCTTTTCCTTCTTGCACATGGATG
ATGACCCCGTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29756.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis