Browse Element(s) Details


OsAffx.29764.1.A1_s_at

Description tigr:9637.m00620
TID=OsAffx.29764.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0798011/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07940NANA9+4073208..4076005retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07950Os.46995.1.S1_x_at1/119+4080684..4083576retrotransposon protein, putative, unclassified
LOC_Os09g07960OsAffx.29756.1.S1_at2/119+4085082..4092146retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07970OsAffx.10637.3.S1_s_at11/119+4094552..4098209transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07970OsAffx.10637.1.S1_s_at10/119+4094552..4098209transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07970OsAffx.10637.4.S1_s_at8/119+4094552..4098209transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07970OsAffx.10637.2.S1_at1/119+4094552..4098209transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07980OsAffx.32056.1.S1_at11/119+4099944..4104937transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07980OsAffx.29764.1.A1_s_at11/119+4099944..4104937transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07980OsAffx.32056.1.S1_x_at11/119+4099944..4104937transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07980OsAffx.30536.1.S1_x_at1/119+4099944..4104937transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07990NANA9+4113206..4114792retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08000OsAffx.29756.1.S1_at10/119+4117718..4121487hypothetical protein
LOC_Os09g08000OsAffx.23323.1.S1_at2/119+4117718..4121487hypothetical protein
LOC_Os09g08000OsAffx.23323.1.S1_x_at1/119+4117718..4121487hypothetical protein
LOC_Os09g08010OsAffx.5954.4.S1_x_at10/119+4124391..4126330hypothetical protein
LOC_Os09g08020OsAffx.5954.1.S1_x_at8/119+4127221..4132305retrotransposon protein, putative, unclassified
LOC_Os09g08020OsAffx.5954.5.S1_x_at6/119+4127221..4132305retrotransposon protein, putative, unclassified
LOC_Os09g08020OsAffx.5954.3.S1_x_at3/119+4127221..4132305retrotransposon protein, putative, unclassified
LOC_Os09g08020OsAffx.5954.2.S1_at1/119+4127221..4132305retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29764.1.A1_s_at--265--4176Chr09:4275078..4275102 (25 bp)
CGCCATGAAGAGAGCCTCCGTAGCG
NONE
OsAffx.29764.1.A1_s_at--1045--4414Chr09:4275079..4275103 (25 bp)
GCCATGAAGAGAGCCTCCGTAGCGA
NONE
OsAffx.29764.1.A1_s_at--212--3514Chr09:4275081..4275105 (25 bp)
CATGAAGAGAGCCTCCGTAGCGAGC
NONE
OsAffx.29764.1.A1_s_at--438--674Chr09:4275082..4275106 (25 bp)
ATGAAGAGAGCCTCCGTAGCGAGCA
NONE
OsAffx.29764.1.A1_s_at--960--8994Chr09:4275083..4275107 (25 bp)
TGAAGAGAGCCTCCGTAGCGAGCAC
NONE
OsAffx.29764.1.A1_s_at--88--2794Chr09:4275085..4275109 (25 bp)
AAGAGAGCCTCCGTAGCGAGCACCA
NONE
OsAffx.29764.1.A1_s_at--857--1354Chr09:4275086..4275110 (25 bp)
AGAGAGCCTCCGTAGCGAGCACCAC
NONE
OsAffx.29764.1.A1_s_at--147--6014Chr09:4275087..4275111 (25 bp)
GAGAGCCTCCGTAGCGAGCACCACT
NONE
OsAffx.29764.1.A1_s_at--257--1374Chr09:4275088..4275112 (25 bp)
AGAGCCTCCGTAGCGAGCACCACTC
NONE
OsAffx.29764.1.A1_s_at--971--1654Chr09:4275090..4275114 (25 bp)
AGCCTCCGTAGCGAGCACCACTCCC
NONE
OsAffx.29764.1.A1_s_at--567--4274Chr09:4275092..4275116 (25 bp)
CCTCCGTAGCGAGCACCACTCCCAT
NONE
Target Sequence 
CGCCATGAAGAGAGCCTCCGTAGCGAGCACCACTCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29764.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis