Browse Element(s) Details


OsAffx.17620.1.S1_at

Description tigr:9637.m00719
TID=OsAffx.17620.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=probable wrky transcription factor 70 (wrky dna-binding protein 70). (mouse-ear cress
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0963011/11WRKY DNA binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09570OsAffx.17617.1.S1_at11/119+5162478..5163879expressed protein
LOC_Os09g09580NANA9+5166148..5168064retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09590NANA9+5172915..5173313hypothetical protein
LOC_Os09g09600OsAffx.29780.1.S1_at9/119+5175165..5178300hypothetical protein
LOC_Os09g09610OsAffx.29781.1.S1_at11/119+5181571..5182636hypothetical protein
LOC_Os09g09619OsAffx.9066.1.S1_x_at1/119+5185168..5186329NA
LOC_Os09g09630OsAffx.17620.1.S1_at11/119+5186993..5189200WRKY DNA binding domain containing protein
LOC_Os09g09640NANA9+5190398..5190983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g09650Os.36393.1.S1_at11/119+5196975..5200335expressed protein
LOC_Os09g09650Os.46050.1.A1_x_at2/119+5196975..5200335expressed protein
LOC_Os09g09660NANA9+5201340..5204432retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09670OsAffx.29782.1.S1_at11/119+5213964..5214838hypothetical protein
LOC_Os09g09670OsAffx.31133.2.S1_at1/119+5213964..5214838hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17620.1.S1_at--316--8191Chr09:5187625..5187649 (25 bp)
GGAAGAATGCTCAGCACACCGGTTC
LOC_Os09g09630
OsAffx.17620.1.S1_at--103--5111Chr09:5187612..5187636 (25 bp)
GCACACCGGTTCAGTTGTTACAGCA
LOC_Os09g09630
OsAffx.17620.1.S1_at--544--6772Chr09:5187596..5187620 (25 bp)
GTTACAGCAACTCCAGATTACGATG
LOC_Os09g09630
OsAffx.17620.1.S1_at--763--9351Chr09:5187540..5187560 (21 bp)
TCTAAAACCAAGCACTCCAGGAGTT
LOC_Os09g09630
OsAffx.17620.1.S1_at--864--7492Chr09:5191236..5191260 (25 bp)
GTGGTGAAACTCTACAACGTTGATT
NONE
OsAffx.17620.1.S1_at--329--5171Chr09:5187273..5187297 (25 bp)
GCAATGACATGGTGTGTCCAGACAT
LOC_Os09g09630
OsAffx.17620.1.S1_at--1132--5671Chr09:5187253..5187277 (25 bp)
GACATTGTTGAGACAGATTCCCCAA
LOC_Os09g09630
OsAffx.17620.1.S1_at--784--91Chr09:5187237..5187261 (25 bp)
ATTCCCCAAAATACTCTTCCATCAA
LOC_Os09g09630
OsAffx.17620.1.S1_at--720--3191Chr09:5187195..5187219 (25 bp)
CAAGGCTGACTAATCATTCGGATGA
LOC_Os09g09630
OsAffx.17620.1.S1_at--705--8971Chr09:5187143..5187167 (25 bp)
TGAAAATTTGTTTGCAGTGCCTGAC
LOC_Os09g09630
OsAffx.17620.1.S1_at--645--4471Chr09:5187125..5187149 (25 bp)
GCCTGACATGTCTTTATTCTCGGAG
LOC_Os09g09630
Target Sequence 
GGAAGAATGCTCAGCACACCGGTTCAGTTGTTACAGCAACTCCAGATTACGATGGATATGAATGGAGAAAGTATGGGCAA
AAGTCAATTTCTAAAACCAAGCACTCCAGGAGTTATTATAGATGCACCAACCAAAAAGGACAAGGTTGTATGGCAACCAA
GACTGTGCAACAAATAGAGAATGACAATAGCAGCAACAGTGTGGTGAAACTCTACAACGTTGATTACTTTGGCAAACATA
CATGCAAGTTTGGCAATGACATGGTGTGTCCAGACATTGTTGAGACAGATTCCCCAAAATACTCTTCCATCAACGACAAA
TATGCTAGCACAAGGCTGACTAATCATTCGGATGATCATCAGCCTAAGAACGATATGAAGCCTGAAAATTTGTTTGCAGT
GCCTGACATGTCTTTATTCTCGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17620.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis