Browse Element(s) Details


OsAffx.17671.1.S1_at

Description tigr:9637.m01005
TID=OsAffx.17671.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=potassium channel, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1279011/11calcium-activated outward-rectifying potassium channel 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12750Os.6430.1.S1_at11/119+7315075..7321298myb family transcription factor, putative, expressed
LOC_Os09g12750OsAffx.7666.1.S1_at1/119+7315075..7321298myb family transcription factor, putative, expressed
LOC_Os09g12759NANA9+7327463..7327689NA
LOC_Os09g12770Os.14719.1.S1_at11/119+7328560..7332289transfactor, putative, expressed
LOC_Os09g12780OsAffx.29822.1.S1_at10/119+7333179..7333967expressed protein
LOC_Os09g12790OsAffx.17671.1.S1_at11/119+7335374..7339496calcium-activated outward-rectifying potassium channel 6, putative, expressed
LOC_Os09g12800NANA9+7346193..7353032zinc finger family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0005774cellular_componentvacuolar membrane
GO:0005216molecular_functionion channel activity
GO:0005509molecular_functioncalcium ion binding
GO:0015269molecular_functioncalcium-activated potassium channel activity
GO:0015271molecular_functionoutward rectifier potassium channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17671.1.S1_at--316--5091Chr09:7338505..7338529 (25 bp)
GCACCGGCACAATTACATCTTTGAT
LOC_Os09g12790
OsAffx.17671.1.S1_at--125--9011Chr09:7338452..7338476 (25 bp)
TGAAGGTTGCACTTGCGCTCACCGT
LOC_Os09g12790
OsAffx.17671.1.S1_at--6--611Chr09:7338362..7338386 (25 bp)
ATGCCGTTTACCTTGCTGTGATGTC
LOC_Os09g12790
OsAffx.17671.1.S1_at--247--6931Chr09:7338322..7338346 (25 bp)
GTATGGCGATCACGCGTTCCGGACA
LOC_Os09g12790
OsAffx.17671.1.S1_at--813--5631Chr09:7338301..7338325 (25 bp)
GACACTGGCTGGACGGCTCTTTGCA
LOC_Os09g12790
OsAffx.17671.1.S1_at--122--3791Chr09:7338264..7338288 (25 bp)
CTCGTGTCGACTCTTGCTGTTGCAA
LOC_Os09g12790
OsAffx.17671.1.S1_at--324--8291Chr09:7338238..7338262 (25 bp)
GGCATTCCTCTACTTAGCGGAGATG
LOC_Os09g12790
OsAffx.17671.1.S1_at--202--3711Chr09:7338191..7338215 (25 bp)
CTATGGCTAACTGGGTGCTGTCGAG
LOC_Os09g12790
OsAffx.17671.1.S1_at--929--3511Chr09:7338163..7338187 (25 bp)
CATGACCGTGTCAGAGTTTCTTGCT
LOC_Os09g12790
OsAffx.17671.1.S1_at--547--6071Chr09:7338150..7338174 (25 bp)
GAGTTTCTTGCTGCGGATATCGACA
LOC_Os09g12790
OsAffx.17671.1.S1_at--313--2051Chr09:7335422..7335446 (25 bp)
ACTTTCAGATCTTCTCGAGAGTCAT
LOC_Os09g12790
Target Sequence 
GCACCGGCACAATTACATCTTTGATCTTAAGAAGGGCCGGATGCGTGTGCGCATGAAGGTTGCACTTGCGCTCACCGTGG
TGGCCATCTGCGTGGGGGTCGGTGCCGCGGTGCTCAAGAGGGTCGAGAATTTGGGGTGGCTCGATGCCGTTTACCTTGCT
GTGATGTCGGTGACCACCGTCGGGTATGGCGATCACGCGTTCCGGACACTGGCTGGACGGCTCTTTGCATCCGCGTGGCT
GCTCGTGTCGACTCTTGCTGTTGCAAGGGCATTCCTCTACTTAGCGGAGATGAGGATTGACAAGAGGCACCGCGCTATGG
CTAACTGGGTGCTGTCGAGAGACATGACCGTGTCAGAGTTTCTTGCTGCGGATATCGACAACAACGGTTATGTCACGAAA
TCGGAATTTGTAGTTTACAAGCTCAAGGAGATGGGCAAAATTTCAGAAAAAGACATAATGATGATCTGTGACCAATTCCA
AAGAATGGACTCAGGAAACTGTGGGAAGATTACACTTTCAGATCTTCTCGAGAGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17671.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis