Browse Element(s) Details


OsAffx.17702.1.S1_at

Description tigr:9637.m01210
TID=OsAffx.17702.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1491011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g14890OsAffx.24469.1.S1_x_at11/119+8888532..8889134hypothetical protein
LOC_Os09g14890OsAffx.24469.1.S1_at11/119+8888532..8889134hypothetical protein
LOC_Os09g14900Os.46012.3.S1_x_at5/119+8898671..8903527retrotransposon protein, putative, unclassified
LOC_Os09g14900Os.27088.1.A1_x_at2/119+8898671..8903527retrotransposon protein, putative, unclassified
LOC_Os09g14900Os.46012.2.S1_x_at2/119+8898671..8903527retrotransposon protein, putative, unclassified
LOC_Os09g14900Os.43516.1.S1_at1/119+8898671..8903527retrotransposon protein, putative, unclassified
LOC_Os09g14910OsAffx.17702.1.S1_at11/119+8910418..8910958hypothetical protein
LOC_Os09g14920OsAffx.17703.1.S1_at11/119+8912627..8915023hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17702.1.S1_at--803--3091Chr09:8910719..8910743 (25 bp)
AATACTTTTGGCTTAGGAGGCTTCA
LOC_Os09g14910
OsAffx.17702.1.S1_at--275--6211Chr09:8910735..8910759 (25 bp)
GAGGCTTCAGTGGAAACCGGATTCA
LOC_Os09g14910
OsAffx.17702.1.S1_at--421--8151Chr09:8910746..8910770 (25 bp)
GGAAACCGGATTCACGAACAGATTG
LOC_Os09g14910
OsAffx.17702.1.S1_at--706--771Chr09:8910779..8910803 (25 bp)
ATGTGCTTGGGACATGGCGTCTTTC
LOC_Os09g14910
OsAffx.17702.1.S1_at--1076--10831Chr09:8910785..8910809 (25 bp)
TTGGGACATGGCGTCTTTCCTGCTA
LOC_Os09g14910
OsAffx.17702.1.S1_at--1020--10271Chr09:8910800..8910824 (25 bp)
TTTCCTGCTACCCATATATGTGCTG
LOC_Os09g14910
OsAffx.17702.1.S1_at--840--10171Chr09:8910814..8910838 (25 bp)
TATATGTGCTGCCAATCATGCTCCC
LOC_Os09g14910
OsAffx.17702.1.S1_at--658--9311Chr09:8910835..8910859 (25 bp)
TCCCGGGTATTCTGATGGCTCTAGA
LOC_Os09g14910
OsAffx.17702.1.S1_at--574--6231Chr09:8910848..8910872 (25 bp)
GATGGCTCTAGATGTTCAAGCACTA
LOC_Os09g14910
OsAffx.17702.1.S1_at--1061--731Chr09:8910859..8910883 (25 bp)
ATGTTCAAGCACTAGGGATGGCAAC
LOC_Os09g14910
OsAffx.17702.1.S1_at--112--3451Chr09:8910893..8910917 (25 bp)
CAGGGCCGGATTGGACGAAAACAGC
LOC_Os09g14910
Target Sequence 
AATACTTTTGGCTTAGGAGGCTTCAGTGGAAACCGGATTCACGAACAGATTGTGTTGAGGATGTGCTTGGGACATGGCGT
CTTTCCTGCTACCCATATATGTGCTGCCAATCATGCTCCCGGGTATTCTGATGGCTCTAGATGTTCAAGCACTAGGGATG
GCAACGGAGCGGGGCAGGGCCGGATTGGACGAAAACAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17702.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis