Browse Element(s) Details


Os.43516.1.S1_at

Description gb:NM_188398.1
DB_XREF= gi:34903879
TID=Os.43516.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43516 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1130011/11cytochrome P450 family protein, putative, expressed
LOC_Os09g149001/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11270Os.34503.1.S1_at11/111+6027827..6029635cytochrome P450 family protein, putative, expressed
LOC_Os01g11270Os.48011.1.S1_x_at2/111+6027827..6029635cytochrome P450 family protein, putative, expressed
LOC_Os01g11280Os.48011.1.S1_x_at11/111+6034256..6035794cytochrome P450 family protein, putative
LOC_Os01g11280Os.48011.1.S1_at11/111+6034256..6035794cytochrome P450 family protein, putative
LOC_Os01g11289NANA1+6039507..6039778NA
LOC_Os01g11300Os.43516.1.S1_at11/111+6054242..6055831cytochrome P450 family protein, putative, expressed
LOC_Os01g11300Os.48011.1.S1_x_at2/111+6054242..6055831cytochrome P450 family protein, putative, expressed
LOC_Os01g11310OsAffx.9930.1.S1_at8/111+6060281..6060736transposon protein, putative, Pong sub-class
LOC_Os01g11320NANA1+6062485..6063280transposon protein, putative, Pong sub-class
LOC_Os01g11330OsAffx.26503.1.S1_at1/111+6065600..6068538retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g11340Os.37093.1.S1_at11/111+6073533..6075417cytochrome P450 family protein, putative, expressed
LOC_Os01g11340Os.48011.1.S1_x_at3/111+6073533..6075417cytochrome P450 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43516.1.S1_at--517--391Chr01:6054676..6054700 (25 bp)
ATCACCGCCGATAAGATCGCCGAAA
LOC_Os01g11300
Os.43516.1.S1_at--803--2791Chr01:6054664..6054688 (25 bp)
AAGATCGCCGAAATGAAGTACACAA
LOC_Os01g11300
Os.43516.1.S1_at--795--5572Chr09:8899280..8899396 (24 bp)
GAAATGAAGTACACAAAGGCTGTTG
LOC_Os09g14900
Os.43516.1.S1_at--1116--5791Chr01:6054599..6054623 (25 bp)
GACGCTGATGCCACACATCGCCTTG
LOC_Os01g11300
Os.43516.1.S1_at--1055--8851Chr01:6054594..6054618 (25 bp)
TGATGCCACACATCGCCTTGCAGAA
LOC_Os01g11300
Os.43516.1.S1_at--766--10731Chr01:6054577..6054601 (25 bp)
TTGCAGAACTTCCAGCTGACGGAAT
LOC_Os01g11300
Os.43516.1.S1_at--958--2491Chr01:6054571..6054595 (25 bp)
AACTTCCAGCTGACGGAATCGTACA
LOC_Os01g11300
Os.43516.1.S1_at--433--5191Chr01:6054556..6054580 (25 bp)
GAATCGTACACGATCCCTAAGGGCA
LOC_Os01g11300
Os.43516.1.S1_at--896--8591Chr01:6054528..6054552 (25 bp)
TGGTGCTCCCGTCGATGTACGAGTC
LOC_Os01g11300
Os.43516.1.S1_at--1001--551Chr01:6054507..6054531 (25 bp)
AGTCGTCGTTTCAGGGGTTCCATGA
LOC_Os01g11300
Os.43516.1.S1_at--492--7891Chr01:6054492..6054516 (25 bp)
GGTTCCATGACCCCGACGCGTTCGA
LOC_Os01g11300
Target Sequence 
ATCACCGCCGATAAGATCGCCGAAATGAAGTACACAAAGGCTGTTGCTCGCGAGGTGGTCCGGCACCGCCCACCGGCGAC
GCTGATGCCACACATCGCCTTGCAGAACTTCCAGCTGACGGAATCGTACACGATCCCTAAGGGCACCCTGGTGCTCCCGT
CGATGTACGAGTCGTCGTTTCAGGGGTTCCATGACCCCGACGCGTTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43516.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis