Browse Element(s) Details


Os.34503.1.S1_at

Description gb:AK071150.1
DB_XREF= gi:32981173
TID=Os.34503.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34503 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078H20, full insert sequence.
FL= gb:AK071150.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1127011/11cytochrome P450 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11220OsAffx.9933.1.S1_at9/111+6001842..6003965expressed protein
LOC_Os01g11230Os.9306.1.S1_at11/111+6004660..6005829SOUL, putative, expressed
LOC_Os01g11240Os.12788.1.S1_at11/111+6007539..6008696expressed protein
LOC_Os01g11250Os.38354.1.S1_x_at11/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11250Os.38354.1.S1_at10/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11250Os.38354.2.A1_x_at3/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11260Os.52800.1.S1_at11/111+6021876..6026442Glycosyl transferase family protein, expressed
LOC_Os01g11270Os.34503.1.S1_at11/111+6027827..6029635cytochrome P450 family protein, putative, expressed
LOC_Os01g11270Os.48011.1.S1_x_at2/111+6027827..6029635cytochrome P450 family protein, putative, expressed
LOC_Os01g11280Os.48011.1.S1_x_at11/111+6034256..6035794cytochrome P450 family protein, putative
LOC_Os01g11280Os.48011.1.S1_at11/111+6034256..6035794cytochrome P450 family protein, putative
LOC_Os01g11289NANA1+6039507..6039778NA
LOC_Os01g11300Os.43516.1.S1_at11/111+6054242..6055831cytochrome P450 family protein, putative, expressed
LOC_Os01g11300Os.48011.1.S1_x_at2/111+6054242..6055831cytochrome P450 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009686biological_processgibberellic acid biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34503.1.S1_at--293--6691Chr01:6028305..6028329 (25 bp)
GTTCCAAGGGTTCCAAGACGCTGAC
LOC_Os01g11270
Os.34503.1.S1_at--850--3171Chr01:6028301..6028325 (25 bp)
CAAGGGTTCCAAGACGCTGACGCGT
LOC_Os01g11270
Os.34503.1.S1_at--619--6691Chr01:6028296..6028320 (25 bp)
GTTCCAAGACGCTGACGCGTTCGAC
LOC_Os01g11270
Os.34503.1.S1_at--1036--2711Chr01:6028034..6028058 (25 bp)
AAGCAGCGCTGAGTCAAGTTGCCAT
LOC_Os01g11270
Os.34503.1.S1_at--271--1171Chr01:6028023..6028047 (25 bp)
AGTCAAGTTGCCATCGTTCTGAGCT
LOC_Os01g11270
Os.34503.1.S1_at--701--6711Chr01:6028008..6028032 (25 bp)
GTTCTGAGCTGGTTCCCGTTACCCA
LOC_Os01g11270
Os.34503.1.S1_at--737--1131Chr01:6027984..6028008 (25 bp)
AGTCCTGCTCCGCTCGGTTTCTTTT
LOC_Os01g11270
Os.34503.1.S1_at--999--1751Chr01:6027954..6027978 (25 bp)
ACCTCCACTGCATGGGCATTACGTA
LOC_Os01g11270
Os.34503.1.S1_at--690--7591Chr01:6027941..6027965 (25 bp)
GGGCATTACGTATCTCGTTCATTCT
LOC_Os01g11270
Os.34503.1.S1_at--1110--1151Chr01:6027886..6027910 (25 bp)
AGTCATCTCCCTCCAAGGTTCTCTT
LOC_Os01g11270
Os.34503.1.S1_at--856--2891Chr01:6027872..6027896 (25 bp)
AAGGTTCTCTTCGTCAACACAGTTA
LOC_Os01g11270
Target Sequence 
GTTCCAAGGGTTCCAAGACGCTGACGCGTTCGACCCGGACCGCTTCTTCTCGGAGGCGCGGAGGGAGGACGTGGTGTACA
AGCGCAACTTCCTCGCGTTCGGCGCCGGCCCGCACCAGTGCGTCGGTCAGCGGTACGCGCTCAACCACCTCGTCATCTTC
ATGGCGCTCTTCGTCTCCCTCGTCGACTTCCGGCGTGAGAGGACGGAGGGCTGCGACGTGCCGGTGTACATGCCGACCAT
GGTGCCGAGGGACGGCTGCGTCGTCTACCTCAAGCAGCGCTGAGTCAAGTTGCCATCGTTCTGAGCTGGTTCCCGTTACC
CAGTCCTGCTCCGCTCGGTTTCTTTTCCTCCACCTCCACTGCATGGGCATTACGTATCTCGTTCATTCTTCATTGCCCCG
CCGCTCCTTTCATTTCCCCAGTCATCTCCCTCCAAGGTTCTCTTCGTCAACACAGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34503.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis