Browse Element(s) Details


Os.38354.2.A1_x_at

Description gb:CB680975
DB_XREF= gi:29684700
DB_XREF=OSJNEf06K08.r
CLONE=OSJNEf06K08
TID=Os.38354.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.38354 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g112503/11Potassium channel KAT1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11190OsAffx.23196.1.S1_at9/111+5991588..5992257hypothetical protein
LOC_Os01g11200OsAffx.23197.1.S1_at11/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.23197.2.S1_at10/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.11754.1.S1_at1/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.23846.1.A1_at1/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11210Os.31675.1.S1_at11/111+6000326..6001671expressed protein
LOC_Os01g11210Os.31675.2.S1_x_at10/111+6000326..6001671expressed protein
LOC_Os01g11220OsAffx.9933.1.S1_at9/111+6001842..6003965expressed protein
LOC_Os01g11230Os.9306.1.S1_at11/111+6004660..6005829SOUL, putative, expressed
LOC_Os01g11240Os.12788.1.S1_at11/111+6007539..6008696expressed protein
LOC_Os01g11250Os.38354.1.S1_x_at11/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11250Os.38354.1.S1_at10/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11250Os.38354.2.A1_x_at3/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11260Os.52800.1.S1_at11/111+6021876..6026442Glycosyl transferase family protein, expressed
LOC_Os01g11270Os.34503.1.S1_at11/111+6027827..6029635cytochrome P450 family protein, putative, expressed
LOC_Os01g11270Os.48011.1.S1_x_at2/111+6027827..6029635cytochrome P450 family protein, putative, expressed
LOC_Os01g11280Os.48011.1.S1_x_at11/111+6034256..6035794cytochrome P450 family protein, putative
LOC_Os01g11280Os.48011.1.S1_at11/111+6034256..6035794cytochrome P450 family protein, putative
LOC_Os01g11289NANA1+6039507..6039778NA

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009860biological_processpollen tube growth
GO:0005886cellular_componentplasma membrane
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0005267molecular_functionpotassium channel activity
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38354.2.A1_x_at--991--4431NONE
GCCATAGCTTGTCAGAAGTTTAACA
NONE
Os.38354.2.A1_x_at--731--2371Chr01:6014992..6015016 (25 bp)
AAACTTGTCAATCCAGAATTTGCTG
LOC_Os01g11250
Os.38354.2.A1_x_at--993--7851NONE
GGTATGTAGTATCCCTTTCAGAAGG
NONE
Os.38354.2.A1_x_at--230--4191NONE
CCCTTTCAGAAGGTCCCAGATTAAG
NONE
Os.38354.2.A1_x_at--1007--271NONE
ATAGTGATCCCTAATCAGGCATGAG
NONE
Os.38354.2.A1_x_at--46--6291NONE
GATGTTTTGAGTTGCAGTCCTGTAG
NONE
Os.38354.2.A1_x_at--189--6671NONE
GTTGCAGTCCTGTAGTTACATTTAA
NONE
Os.38354.2.A1_x_at--526--5951NONE
GAGCAATGTAGTTTTTATTCCGCTT
NONE
Os.38354.2.A1_x_at--65--10231Chr01:6014681..6014705 (25 bp)
TATTCCGCTTTCAAAATGTTGGATC
LOC_Os01g11250
Os.38354.2.A1_x_at--696--2291Chr01:6014668..6014692 (25 bp)
AAATGTTGGATCATGGCAGAGGGCA
LOC_Os01g11250
Os.38354.2.A1_x_at--977--1071NONE
AGGGCAGCCCTTTATGATTTGTGGA
NONE
Target Sequence 
GCCATAGCTTGTCAGAAGTTTAACAATTATNNTNTTACAAAACTTGTCAATCCAGAATTTGCTGAAATTGATGATATTNC
AGTAATTCGNGATGGNGATCATNTGTTTTTTATGGAAATTTGAATAAGGATGCTTGAAATCAGCAACGATGCAAAGAACT
GCAGATAGGTATGTAGTATCCCTTTCAGAAGGTCCCAGATTAAGATAATAGTGATCCCTAATCAGGCATGAGGGGACTTG
GCATGATAATCAAGAACATGCCCCCTAGGGATGTTTTGAGTTGCAGTCCTGTAGTTACATTTAATTTTTCTTTAGAATGT
AAATGTAGAATTTTGGAGCAATGTAGTTTTTATTCCGCTTTCAAAATGTTGGATCATGGCAGAGGGCAGCCCTTTATGAT
TTGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38354.2.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis