Browse Element(s) Details


OsAffx.11754.1.S1_at

Description tigr:9629.m06565
TID=OsAffx.11754.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g112001/11Myb-like DNA-binding domain containing protein
LOC_Os08g280701/11hypothetical protein
LOC_Os01g381801/11peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11160Os.33762.1.S1_at11/111+5980426..5982677Amino acid permease family protein, expressed
LOC_Os01g11170OsAffx.9936.2.S1_at11/111+5987755..5988636expressed protein
LOC_Os01g11190OsAffx.23196.1.S1_at9/111+5991588..5992257hypothetical protein
LOC_Os01g11200OsAffx.23197.1.S1_at11/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.23197.2.S1_at10/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.11754.1.S1_at1/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.23846.1.A1_at1/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11210Os.31675.1.S1_at11/111+6000326..6001671expressed protein
LOC_Os01g11210Os.31675.2.S1_x_at10/111+6000326..6001671expressed protein
LOC_Os01g11220OsAffx.9933.1.S1_at9/111+6001842..6003965expressed protein
LOC_Os01g11230Os.9306.1.S1_at11/111+6004660..6005829SOUL, putative, expressed
LOC_Os01g11240Os.12788.1.S1_at11/111+6007539..6008696expressed protein
LOC_Os01g11250Os.38354.1.S1_x_at11/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11250Os.38354.1.S1_at10/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11250Os.38354.2.A1_x_at3/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11260Os.52800.1.S1_at11/111+6021876..6026442Glycosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009611biological_processresponse to wounding
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009790biological_processembryonic development
GO:0009826biological_processunidimensional cell growth
GO:0030154biological_processcell differentiation
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11754.1.S1_at--32--5031Chr01:38780870..38780891 (22 bp)
GCAGTTTTTCCCTAGAGGGCTGCTA
NONE
OsAffx.11754.1.S1_at--594--10431Chr01:38780808..38780832 (25 bp)
TTAGGTGTCAAGTCCGGTATCAGAT
NONE
OsAffx.11754.1.S1_at--79--3916Chr09:19397002..19397024 (22 bp)
ATCAGACGATTCTACCACGTTTTTA
NONE
OsAffx.11754.1.S1_at--257--3351Chr01:38780754..38780778 (25 bp)
CACGTTTTTATGATACTTGCGAGGT
NONE
OsAffx.11754.1.S1_at--254--73Chr03:3689002..3689021 (20 bp)
ATACTTGTAAGGTATCAGGTCCTAA
NONE
OsAffx.11754.1.S1_at--57--9614Chr01:21713405..21713429 (25 bp)
TCAGGTCCTAATACCTAACCGGTAT
LOC_Os01g38180
OsAffx.11754.1.S1_at--593--711Chr01:38780227..38780574 (25 bp)
ATGATACTTATCAGCCGCAGGCGGC
NONE
OsAffx.11754.1.S1_at--235--7491Chr01:38780123..38780147 (25 bp)
GTGGTTCTCGAACACCCTTGACGAT
NONE
OsAffx.11754.1.S1_at--930--2471Chr01:38780113..38780137 (25 bp)
AACACCCTTGACGATGCGCTAGAGA
NONE
OsAffx.11754.1.S1_at--80--8951Chr01:38780105..38780129 (25 bp)
TGACGATGCGCTAGAGAAGGACCTC
NONE
OsAffx.11754.1.S1_at--1094--10231Chr01:38780070..38780094 (25 bp)
TTTGGCACAGCGTCACCAGCGATGC
NONE
Target Sequence 
GCAGTTTTTCCCTAGAGGGCTGCTATATAACGGAATCCCATTTTTGAACGGGATGATACCGGTTAGGTGTCAAGTCCGGT
ATCAGATGATACATATCAGGTATCAGACGATTCTACCACGTTTTTATGATACTTGCGAGGTATCAGATGATACCTATCAG
GTATCATGTGATTCTACCACGTATCAGGTGATACTTGTAAGGTATCAGGTCCTAATACCTAACCGGTATCAGATGATACT
TATCAGCCGCAGGCGGCACCCGAGGGTCGTCTCCTCCTCCGGCCGTGGCCAGAGCATCAGCGTGCTCACCACCGGCGACG
AGACAGAGACCGCCGCGTGGTTCTCGAACACCCTTGACGATGCGCTAGAGAAGGACCTCTACACGCAGCTTTGGCACAGC
GTCACCAGCGATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11754.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis