Browse Element(s) Details


OsAffx.23196.1.S1_at

Description tigr:9629.m01074
TID=OsAffx.23196.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g111909/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11150Os.30473.1.S1_at11/111+5965621..5969291oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g11160Os.33762.1.S1_at11/111+5980426..5982677Amino acid permease family protein, expressed
LOC_Os01g11170OsAffx.9936.2.S1_at11/111+5987755..5988636expressed protein
LOC_Os01g11190OsAffx.23196.1.S1_at9/111+5991588..5992257hypothetical protein
LOC_Os01g11200OsAffx.23197.1.S1_at11/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.23197.2.S1_at10/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.11754.1.S1_at1/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.23846.1.A1_at1/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11210Os.31675.1.S1_at11/111+6000326..6001671expressed protein
LOC_Os01g11210Os.31675.2.S1_x_at10/111+6000326..6001671expressed protein
LOC_Os01g11220OsAffx.9933.1.S1_at9/111+6001842..6003965expressed protein
LOC_Os01g11230Os.9306.1.S1_at11/111+6004660..6005829SOUL, putative, expressed
LOC_Os01g11240Os.12788.1.S1_at11/111+6007539..6008696expressed protein
LOC_Os01g11250Os.38354.1.S1_x_at11/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11250Os.38354.1.S1_at10/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11250Os.38354.2.A1_x_at3/111+6014544..6018924Potassium channel KAT1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23196.1.S1_at--351--1511NONE
AGCAGTTGGTGACGATAGCCACGTT
NONE
OsAffx.23196.1.S1_at--654--5031NONE
GCAGTTGGTGACGATAGCCACGTTG
NONE
OsAffx.23196.1.S1_at--954--1231Chr01:5991905..5991956 (25 bp)
AGTTGGTGACGATAGCCACGTTGGC
LOC_Os01g11190
OsAffx.23196.1.S1_at--821--6611Chr01:5991906..5991957 (25 bp)
GTTGGTGACGATAGCCACGTTGGCA
LOC_Os01g11190
OsAffx.23196.1.S1_at--250--10811Chr01:5991907..5991958 (25 bp)
TTGGTGACGATAGCCACGTTGGCAA
LOC_Os01g11190
OsAffx.23196.1.S1_at--1161--8931Chr01:5991911..5991962 (25 bp)
TGACGATAGCCACGTTGGCAACGGC
LOC_Os01g11190
OsAffx.23196.1.S1_at--348--5771Chr01:5991912..5991963 (25 bp)
GACGATAGCCACGTTGGCAACGGCG
LOC_Os01g11190
OsAffx.23196.1.S1_at--269--1891Chr01:5991913..5991964 (25 bp)
ACGATAGCCACGTTGGCAACGGCGA
LOC_Os01g11190
OsAffx.23196.1.S1_at--12--4051Chr01:5991914..5991965 (25 bp)
CGATAGCCACGTTGGCAACGGCGAC
LOC_Os01g11190
OsAffx.23196.1.S1_at--841--7211Chr01:5992027..5992051 (25 bp)
GTCGAGCAGCTAGATGCTCGGTGTT
LOC_Os01g11190
OsAffx.23196.1.S1_at--142--1511Chr01:5992031..5992055 (25 bp)
AGCAGCTAGATGCTCGGTGTTGGAG
LOC_Os01g11190
Target Sequence 
AGCAGTTGGTGACGATAGCCACGTTGGCAACGGCGACGGCGGTCGTGGATGTGGTGGCTGCCGTGTCAACTGGCGGCGGC
GGCGGCGGAAGACATGGCGTCGAGCAGCTAGATGCTCGGTGTTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23196.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis